Gm11877 Pseudogene Detail

Summary

• Symbol
  Gm11877
• Name
  predicted gene 11877

• Feature Type
  pseudogene
• IDs
  MGI:3652029
  NCBI Gene: 623122
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:19298333-19299184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 7.43 cM

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652029	pseudogene	Chr4:19298260-19299383 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012544	pseudogene	Chr4:16307935-16308786 (+)
A/J	MGP_AJ_G0012537	pseudogene	Chr4:15848386-15849237 (+)
AKR/J	MGP_AKRJ_G0012503	pseudogene	Chr4:16192916-16193767 (+)
BALB/cJ	MGP_BALBcJ_G0012523	pseudogene	Chr4:15818047-15818898 (+)
C3H/HeJ	MGP_C3HHeJ_G0012383	pseudogene	Chr4:16302311-16303162 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012836	pseudogene	Chr4:16969330-16970181 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012362	pseudogene	Chr4:17452075-17452926 (+)
DBA/2J	MGP_DBA2J_G0012416	pseudogene	Chr4:15641226-15642077 (+)
FVB/NJ	MGP_FVBNJ_G0012420	pseudogene	Chr4:15392901-15393752 (+)
LP/J	MGP_LPJ_G0012490	pseudogene	Chr4:16348964-16349815 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012426	pseudogene	Chr4:18421570-18422421 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012838	pseudogene	Chr4:16091598-16092449 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11877
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000082320 (Evidence)
• NCBI Gene
  623122

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082320	Ensembl Gene Model | MGI Sequence Detail	852	C57BL/6J
transcript	ENSMUST00000118921	Ensembl | MGI Sequence Detail	852	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11877:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36575	Chr4:19298257-19298258 (+)	-75 bp