Gm12663 Pseudogene Detail

Summary

• Symbol
  Gm12663
• Name
  predicted gene 12663

• Feature Type
  pseudogene
• IDs
  MGI:3652168
  NCBI Gene: 105274305
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:16585109-16586066 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 9.41 cM

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652168	pseudogene	Chr11:16584091-16586146 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0010551	pseudogene	Chr11:14024123-14027272 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012282	pseudogene	Chr3:4826452-4827467 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010727	pseudogene	Chr3:3622442-3623421 (+)
CAST/EiJ	MGP_CASTEiJ_G0011637	pseudogene	Chr3:4653718-4654739 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011956	pseudogene	Chr3:4781930-4782945 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011891	pseudogene	Chr3:5669590-5670619 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010814	pseudogene	Chr11:14098892-14101299 (-)
PWK/PhJ	MGP_PWKPhJ_G0011486	pseudogene	Chr3:4320851-4321874 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011299	pseudogene	Chr3:4348101-4349113 (+)
WSB/EiJ	MGP_WSBEiJ_G0011658	pseudogene	Chr3:4229103-4230132 (+)

Homology

• Gene Tree
  Gm12663
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000101316 (Evidence)
• NCBI Gene
  105274305

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101316	Ensembl Gene Model | MGI Sequence Detail	958	C57BL/6J
transcript	ENSMUST00000118481	Ensembl | MGI Sequence Detail	958	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12663:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106943	Chr11:16586128-16586141 (-)	-69 bp