Hnf1aos2 Gene Detail

Summary

• Symbol
  Hnf1aos2
• Name
  HNF1 homeobox A, opposite strand 2
• Synonyms
  Gm13825, Haster

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3652220
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:115106882-115109459 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 55.99 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652220	antisense lncRNA gene	Chr5:115106882-115109459 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004150	antisense lncRNA gene	Chr5:117781002-117783579 (+)
A/J	MGP_AJ_G0004129	antisense lncRNA gene	Chr5:113121128-113123707 (+)
AKR/J	MGP_AKRJ_G0004110	antisense lncRNA gene	Chr5:116720935-116723512 (+)
BALB/cJ	MGP_BALBcJ_G0004116	antisense lncRNA gene	Chr5:114517549-114520126 (+)
C3H/HeJ	MGP_C3HHeJ_G0004064	antisense lncRNA gene	Chr5:117247522-117250100 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004264	antisense lncRNA gene	Chr5:122334336-122336913 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003741	antisense lncRNA gene	Chr5:107914636-107917225 (+)
CAST/EiJ	MGP_CASTEiJ_G0004026	antisense lncRNA gene	Chr5:116156362-116158937 (+)
CBA/J	MGP_CBAJ_G0004058	antisense lncRNA gene	Chr5:127005764-127008343 (+)
DBA/2J	MGP_DBA2J_G0004073	antisense lncRNA gene	Chr5:113199573-113202150 (+)
FVB/NJ	MGP_FVBNJ_G0004090	antisense lncRNA gene	Chr5:112013166-112015745 (+)
LP/J	MGP_LPJ_G0004151	antisense lncRNA gene	Chr5:118360702-118363279 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004079	antisense lncRNA gene	Chr5:131372543-131375160 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004261	antisense lncRNA gene	Chr5:116199009-116201586 (+)
PWK/PhJ	MGP_PWKPhJ_G0003979	antisense lncRNA gene	Chr5:111849362-111851939 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003923	antisense lncRNA gene	Chr5:113743626-113746212 (+)
WSB/EiJ	MGP_WSBEiJ_G0004062	antisense lncRNA gene	Chr5:116784352-116786931 (+)

Homology

• Gene Tree
  Hnf1aos2
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  3 involving Hnf1aos2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086140 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086140	Ensembl Gene Model | MGI Sequence Detail	2578	C57BL/6J
transcript	ENSMUST00000138108	Ensembl | MGI Sequence Detail	442	Not Applicable

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:332319 Beucher A, et al., The HASTER lncRNA promoter is a cis-acting transcriptional stabilizer of HNF1A. Nat Cell Biol. 2022 Oct;24(10):1528-1540

TSS for Hnf1aos2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48195	Chr5:115106848-115106867 (+)	-24 bp
Tssr48196	Chr5:115106887-115106894 (+)	9 bp
Tssr48197	Chr5:115107929-115107944 (+)	1,055 bp