Gm13571 Gene Detail

Summary

• Symbol
  Gm13571
• Name
  predicted gene 13571

• Feature Type
  lncRNA gene
• IDs
  MGI:3652223
  NCBI Gene: 102636093
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:60168532-60201578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 34.58 cM

Strain
Comparison

• SNPs within 2kb
  1026 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652223	lncRNA gene	Chr2:60168432-60201583 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003565	antisense lncRNA gene	Chr2:59927317-59963215 (+)
A/J	MGP_AJ_G0003545	antisense lncRNA gene	Chr2:57618025-57651191 (+)
AKR/J	MGP_AKRJ_G0003524	antisense lncRNA gene	Chr2:59192735-59225780 (+)
BALB/cJ	MGP_BALBcJ_G0003534	antisense lncRNA gene	Chr2:57733076-57767593 (+)
C3H/HeJ	MGP_C3HHeJ_G0003482	antisense lncRNA gene	Chr2:59298273-59332060 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003672	antisense lncRNA gene	Chr2:61688958-61723804 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003182	antisense lncRNA gene	Chr2:55194088-55227358 (+)
CAST/EiJ	MGP_CASTEiJ_G0003445	antisense lncRNA gene	Chr2:59340918-59377524 (+)
CBA/J	MGP_CBAJ_G0003479	antisense lncRNA gene	Chr2:64039214-64072283 (+)
DBA/2J	MGP_DBA2J_G0003487	antisense lncRNA gene	Chr2:57216882-57250642 (+)
FVB/NJ	MGP_FVBNJ_G0003506	antisense lncRNA gene	Chr2:56765224-56798480 (+)
LP/J	MGP_LPJ_G0003560	antisense lncRNA gene	Chr2:59775535-59808414 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003494	antisense lncRNA gene	Chr2:65650563-65684805 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003675	antisense lncRNA gene	Chr2:59232873-59271724 (+)
PWK/PhJ	MGP_PWKPhJ_G0003400	antisense lncRNA gene	Chr2:57075220-57109150 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003345	antisense lncRNA gene	Chr2:59298076-59330832 (+)
WSB/EiJ	MGP_WSBEiJ_G0003480	antisense lncRNA gene	Chr2:59521543-59555172 (+)

Homology

• Gene Tree
  Gm13571
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13571
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4

• Ensembl
  ENSMUSG00000086196 (Evidence)
• NCBI Gene
  102636093

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086196	Ensembl Gene Model | MGI Sequence Detail	33047	C57BL/6J
transcript	ENSMUST00000151984	Ensembl | MGI Sequence Detail	2127	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17886	Chr2:60196826-60196838 (+)	28,300 bp
Tssr17887	Chr2:60197958-60197976 (+)	29,435 bp