Gm11962 Pseudogene Detail

Summary

• Symbol
  Gm11962
• Name
  predicted gene 11962
• Synonyms
  EG382478

• Feature Type
  pseudogene
• IDs
  MGI:3652247
  NCBI Gene: 382478
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:5445192-5445446 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652247	pseudogene	Chr11:5445178-5445447 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010566	pseudogene	Chr11:2550626-2550880 (-)
A/J	MGP_AJ_G0010559	pseudogene	Chr11:2461685-2461939 (-)
AKR/J	MGP_AKRJ_G0010519	pseudogene	Chr11:2597036-2597290 (-)
BALB/cJ	MGP_BALBcJ_G0010533	pseudogene	Chr11:2449405-2449659 (-)
C3H/HeJ	MGP_C3HHeJ_G0010456	pseudogene	Chr11:2467834-2468088 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010803	pseudogene	Chr11:2617695-2617949 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009476	pseudogene	Chr11:2351395-2351645 (-)
CAST/EiJ	MGP_CASTEiJ_G0010281	pseudogene	Chr11:2426060-2426310 (-)
CBA/J	MGP_CBAJ_G0010428	pseudogene	Chr11:2942905-2943159 (-)
DBA/2J	MGP_DBA2J_G0010458	pseudogene	Chr11:2356623-2356877 (-)
FVB/NJ	MGP_FVBNJ_G0010476	pseudogene	Chr11:2400245-2400499 (-)
LP/J	MGP_LPJ_G0010548	pseudogene	Chr11:2628404-2628658 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010452	pseudogene	Chr11:2579465-2579719 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010781	pseudogene	Chr11:2579456-2579710 (-)
PWK/PhJ	MGP_PWKPhJ_G0010181	pseudogene	Chr11:2385048-2385302 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009997	pseudogene	Chr11:2569485-2569735 (-)
WSB/EiJ	MGP_WSBEiJ_G0010342	pseudogene	Chr11:2434271-2434525 (-)

Homology

• Gene Tree
  Gm11962
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085232 (Evidence)
• NCBI Gene
  382478

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085232	Ensembl Gene Model | MGI Sequence Detail	255	C57BL/6J
transcript	ENSMUST00000145746	Ensembl | MGI Sequence Detail	255	Not Applicable

Other
Accession IDs

MGI:3648287

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;