Gm11810 Pseudogene Detail

Summary

• Symbol
  Gm11810
• Name
  predicted gene 11810

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3652275
  NCBI Gene: 100039478
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:8456166-8456498 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 3.61 cM

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652275	pseudogene	Chr4:8456166-8456498 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012500	pseudogene	Chr4:5033017-5033348 (-)
A/J	MGP_AJ_G0012494	pseudogene	Chr4:4943986-4944317 (-)
AKR/J	MGP_AKRJ_G0012458	pseudogene	Chr4:4975363-4975694 (-)
BALB/cJ	MGP_BALBcJ_G0012477	pseudogene	Chr4:4925718-4926049 (-)
C3H/HeJ	MGP_C3HHeJ_G0012339	pseudogene	Chr4:5137134-5137465 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012790	pseudogene	Chr4:5329697-5330029 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011148	pseudogene	Chr4:4647997-4648329 (-)
CAST/EiJ	MGP_CASTEiJ_G0012108	pseudogene	Chr4:4976240-4976572 (-)
CBA/J	MGP_CBAJ_G0012319	pseudogene	Chr4:5399018-5399349 (-)
DBA/2J	MGP_DBA2J_G0012373	pseudogene	Chr4:4912617-4912948 (-)
FVB/NJ	MGP_FVBNJ_G0012374	pseudogene	Chr4:4771166-4771497 (-)
LP/J	MGP_LPJ_G0012447	pseudogene	Chr4:5046948-5047279 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012382	pseudogene	Chr4:5657476-5657807 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012794	pseudogene	Chr4:4963281-4963613 (-)
PWK/PhJ	MGP_PWKPhJ_G0011942	pseudogene	Chr4:4898801-4899133 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012132	pseudogene	Chr4:5067686-5068018 (-)

Homology

• Gene Tree
  Gm11810
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000082151 (Evidence)
• NCBI Gene
  100039478

Representative Sequences			Length	Strain/Species
genomic	100039478	NCBI Gene Model | MGI Sequence Detail	333	C57BL/6J
transcript	XM_036164607	RefSeq | MGI Sequence Detail	333	C57BL/6J
polypeptide	XP_036020500	RefSeq | MGI Sequence Detail	110	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm11810:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40886	Chr4:8456557-8456558 (-)	-60 bp