A730035I17Rik Gene Detail

Summary

• Symbol
  A730035I17Rik
• Name
  RIKEN cDNA A730035I17 gene
• Synonyms
  Gm34285

• Feature Type
  lncRNA gene
• IDs
  MGI:3696858
  NCBI Gene: 102637492
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:98330980-98333843 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.77 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3696858	lncRNA gene	Chr5:98330977-98333843 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004117	antisense lncRNA gene	Chr5:99539008-99541861 (-)
A/J	MGP_AJ_G0004098	antisense lncRNA gene	Chr5:95849002-95851853 (-)
AKR/J	MGP_AKRJ_G0004077	antisense lncRNA gene	Chr5:99030307-99033162 (-)
BALB/cJ	MGP_BALBcJ_G0004084	antisense lncRNA gene	Chr5:96861097-96863952 (-)
C3H/HeJ	MGP_C3HHeJ_G0004031	antisense lncRNA gene	Chr5:99364820-99367669 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004232	antisense lncRNA gene	Chr5:103703479-103706342 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003708	antisense lncRNA gene	Chr5:91146624-91149529 (-)
CAST/EiJ	MGP_CASTEiJ_G0003994	antisense lncRNA gene	Chr5:97976322-97979169 (-)
CBA/J	MGP_CBAJ_G0004025	antisense lncRNA gene	Chr5:107287398-107290247 (-)
DBA/2J	MGP_DBA2J_G0004040	antisense lncRNA gene	Chr5:96044559-96047408 (-)
FVB/NJ	MGP_FVBNJ_G0004058	antisense lncRNA gene	Chr5:94861179-94864034 (-)
LP/J	MGP_LPJ_G0004119	antisense lncRNA gene	Chr5:100139858-100142711 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004047	antisense lncRNA gene	Chr5:112371500-112374351 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004228	antisense lncRNA gene	Chr5:98466625-98469480 (-)
PWK/PhJ	MGP_PWKPhJ_G0003947	antisense lncRNA gene	Chr5:94441352-94444199 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003891	antisense lncRNA gene	Chr5:96138336-96141199 (-)
WSB/EiJ	MGP_WSBEiJ_G0004029	antisense lncRNA gene	Chr5:98794376-98797209 (-)

Homology

• Gene Tree
  A730035I17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving A730035I17Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000045238 (Evidence)
• NCBI Gene
  102637492

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045238	Ensembl Gene Model | MGI Sequence Detail	2864	C57BL/6J
transcript	ENSMUST00000057889	Ensembl | MGI Sequence Detail	2248	Not Applicable
polypeptide	Q9CTW8	UniProt | EBI | MGI Sequence Detail	228	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5593444

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for A730035I17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52008	Chr5:98333923-98333940 (-)	-89 bp
Tssr52007	Chr5:98333873-98333880 (-)	-34 bp
Tssr52006	Chr5:98333829-98333856 (-)	0 bp
Tssr52005	Chr5:98333782-98333822 (-)	41 bp