B430219N15Rik Gene Detail

Summary

• Symbol
  B430219N15Rik
• Name
  RIKEN cDNA B430219N15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697426
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:7655949-7657121 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 2.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697426	lncRNA gene	Chr10:7655949-7657121 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002836	antisense lncRNA gene	Chr10:5006399-5007575 (+)
A/J	MGP_AJ_G0002813	antisense lncRNA gene	Chr10:4759775-4761001 (+)
AKR/J	MGP_AKRJ_G0002794	antisense lncRNA gene	Chr10:4853630-4854794 (+)
BALB/cJ	MGP_BALBcJ_G0002800	antisense lncRNA gene	Chr10:4731506-4732682 (+)
C3H/HeJ	MGP_C3HHeJ_G0002758	antisense lncRNA gene	Chr10:4984486-4985643 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002942	antisense lncRNA gene	Chr10:5121484-5122656 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002488	antisense lncRNA gene	Chr10:4352216-4353356 (+)
CAST/EiJ	MGP_CASTEiJ_G0002730	antisense lncRNA gene	Chr10:4901799-4902956 (+)
CBA/J	MGP_CBAJ_G0002753	antisense lncRNA gene	Chr10:5278014-5279171 (+)
DBA/2J	MGP_DBA2J_G0002760	antisense lncRNA gene	Chr10:4687926-4689083 (+)
FVB/NJ	MGP_FVBNJ_G0002780	antisense lncRNA gene	Chr10:4635178-4636335 (+)
LP/J	MGP_LPJ_G0002836	antisense lncRNA gene	Chr10:4849783-4850943 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002770	antisense lncRNA gene	Chr10:5232375-5233532 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002947	antisense lncRNA gene	Chr10:4806172-4807329 (+)
PWK/PhJ	MGP_PWKPhJ_G0002688	antisense lncRNA gene	Chr10:4661414-4662568 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002638	antisense lncRNA gene	Chr10:4882864-4884020 (+)
WSB/EiJ	MGP_WSBEiJ_G0002759	antisense lncRNA gene	Chr10:4807431-4808599 (+)

Homology

• Gene Tree
  B430219N15Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  2

• Ensembl
  ENSMUSG00000085211 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085211	Ensembl Gene Model | MGI Sequence Detail	1173	C57BL/6J
transcript	ENSMUST00000180853	Ensembl | MGI Sequence Detail	1105	Not Applicable
polypeptide	Q3TMR5	UniProt | EBI | MGI Sequence Detail	186	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 7
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for B430219N15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92317	Chr10:7656029-7656041 (+)	86 bp