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A230083N12Rik Gene Detail
Summary
  • Symbol
    A230083N12Rik
  • Name
    RIKEN cDNA A230083N12 gene
  • Synonyms
    OTTMUSG00000009389
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3698879
    NCBI Gene: 100125340
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:74168561-74169951 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 36.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    152 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3698879
 lncRNA gene Chr4:74168561-74169951 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003910
 antisense lncRNA gene Chr4:73527791-73529183 (-)
A/J MGP_AJ_G0003890
 antisense lncRNA gene Chr4:71038254-71039644 (-)
AKR/J MGP_AKRJ_G0003867
 antisense lncRNA gene Chr4:72770078-72771468 (-)
BALB/cJ MGP_BALBcJ_G0003876
 antisense lncRNA gene Chr4:71170220-71171610 (-)
C3H/HeJ MGP_C3HHeJ_G0003823
 antisense lncRNA gene Chr4:73373447-73374837 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004024
 antisense lncRNA gene Chr4:76317457-76318847 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003515
 antisense lncRNA gene Chr4:67473197-67474588 (-)
CAST/EiJ MGP_CASTEiJ_G0003787
 antisense lncRNA gene Chr4:71386808-71388195 (-)
CBA/J MGP_CBAJ_G0003816
 antisense lncRNA gene Chr4:78708144-78709515 (-)
DBA/2J MGP_DBA2J_G0003833
 antisense lncRNA gene Chr4:70803745-70805137 (-)
FVB/NJ MGP_FVBNJ_G0003851
 antisense lncRNA gene Chr4:69888276-69889666 (-)
LP/J MGP_LPJ_G0003912
 antisense lncRNA gene Chr4:73882918-73884310 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003839
 antisense lncRNA gene Chr4:82703396-82704787 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004019
 antisense lncRNA gene Chr4:72929601-72931152 (-)
PWK/PhJ MGP_PWKPhJ_G0003742
 antisense lncRNA gene Chr4:69264274-69265728 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003688
 antisense lncRNA gene Chr4:70354019-70356341 (-)
WSB/EiJ MGP_WSBEiJ_G0003822
 antisense lncRNA gene Chr4:72990366-72991764 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    2
  • Gene trapped
    5
  • Radiation induced
    1
  • Genomic Mutations
    3 involving A230083N12Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    22
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085482 Ensembl Gene Model | MGI Sequence Detail 1391 C57BL/6J ±  kb
transcript ENSMUST00000126646 Ensembl | MGI Sequence Detail 572 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:3702632
References
more
  • Summaries
    All 15
    Phenotypes 6
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory