D630008O14Rik Gene Detail

Summary

• Symbol
  D630008O14Rik
• Name
  RIKEN cDNA D630008O14 gene
• Synonyms
  D630044D05Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3698880
  NCBI Gene: 320761
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:106469673-106502775 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1005 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3698880	lncRNA gene	Chr1:106469673-106502775 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002729	antisense lncRNA gene	Chr1:108710700-108743740 (+)
A/J	MGP_AJ_G0002705	antisense lncRNA gene	Chr1:104904421-104937401 (+)
AKR/J	MGP_AKRJ_G0002686	antisense lncRNA gene	Chr1:107765393-107800436 (+)
BALB/cJ	MGP_BALBcJ_G0002692	antisense lncRNA gene	Chr1:104997639-105034148 (+)
C3H/HeJ	MGP_C3HHeJ_G0002651	antisense lncRNA gene	Chr1:108223348-108257261 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002835	antisense lncRNA gene	Chr1:112851721-112884726 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002383	antisense lncRNA gene	Chr1:99216371-99248333 (+)
CAST/EiJ	MGP_CASTEiJ_G0002623	antisense lncRNA gene	Chr1:107143592-107178111 (+)
CBA/J	MGP_CBAJ_G0002646	antisense lncRNA gene	Chr1:116714405-116747422 (+)
DBA/2J	MGP_DBA2J_G0002652	antisense lncRNA gene	Chr1:103974119-104007122 (+)
FVB/NJ	MGP_FVBNJ_G0002672	antisense lncRNA gene	Chr1:102908540-102941813 (+)
LP/J	MGP_LPJ_G0002731	antisense lncRNA gene	Chr1:109961881-109995410 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002662	antisense lncRNA gene	Chr1:121129522-121164452 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002840	antisense lncRNA gene	Chr1:107861573-107895781 (+)
PWK/PhJ	MGP_PWKPhJ_G0002581	antisense lncRNA gene	Chr1:102996759-103030147 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002532	antisense lncRNA gene	Chr1:106523666-106557340 (+)
WSB/EiJ	MGP_WSBEiJ_G0002653	antisense lncRNA gene	Chr1:107690786-107724481 (+)

Homology

• Gene Tree
  D630008O14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving D630008O14Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• UniProt
  1

• Ensembl
  ENSMUSG00000054006 (Evidence)
• NCBI Gene
  320761

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054006	Ensembl Gene Model | MGI Sequence Detail	33103	C57BL/6J
transcript	ENSMUST00000144260	Ensembl | MGI Sequence Detail	1568	Not Applicable
polypeptide	Q8C703	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 3

  Primer pair 1

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for D630008O14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8317	Chr1:106469668-106469706 (+)	14 bp