Gm10180 Pseudogene Detail

Summary

• Symbol
  Gm10180
• Name
  predicted gene 10180

• Feature Type
  pseudogene
• IDs
  MGI:3701608
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:25012700-25012777 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 10.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3701608	pseudogene	Chr9:25012700-25012777 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014124	pseudogene	Chr9:22511153-22511230 (-)
A/J	MGP_AJ_G0014145	pseudogene	Chr9:22034155-22034232 (-)
AKR/J	MGP_AKRJ_G0014066	pseudogene	Chr9:22463238-22463304 (-)
BALB/cJ	MGP_BALBcJ_G0014094	pseudogene	Chr9:21935908-21935985 (-)
C3H/HeJ	MGP_C3HHeJ_G0013926	pseudogene	Chr9:22794904-22794981 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009463	pseudogene	Chr10:119847116-119847193 (-)
CAST/EiJ	MGP_CASTEiJ_G0013584	pseudogene	Chr9:22656419-22656496 (-)
CBA/J	MGP_CBAJ_G0013908	pseudogene	Chr9:24235518-24235595 (-)
DBA/2J	MGP_DBA2J_G0013989	pseudogene	Chr9:22011570-22011682 (-)
FVB/NJ	MGP_FVBNJ_G0013989	pseudogene	Chr9:21503915-21503992 (-)
LP/J	MGP_LPJ_G0014073	pseudogene	Chr9:22693034-22693111 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014018	pseudogene	Chr9:25859757-25859834 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014509	pseudogene	Chr9:22447334-22447411 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010449	pseudogene	Chr13:100763640-100763717 (+)
WSB/EiJ	MGP_WSBEiJ_G0013641	pseudogene	Chr9:22169226-22169303 (-)

Homology

• Gene Tree
  Gm10180
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000066809 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066809	Ensembl Gene Model | MGI Sequence Detail	78	C57BL/6J
transcript	ENSMUST00000086236	Ensembl | MGI Sequence Detail	78	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm10180:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88517	Chr9:25012812-25012816 (-)	-37 bp