Bloc1s2-ps Pseudogene Detail

Summary

• Symbol
  Bloc1s2-ps
• Name
  biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene
• Synonyms
  Bloc1s2b

• Feature Type
  pseudogene
• IDs
  MGI:3702045
  NCBI Gene: 625631
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:52509766-52510197 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 30.25 cM

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702045	pseudogene	Chr2:52509751-52510634 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011638	pseudogene	Chr2:51971792-51973757 (+)
A/J	MGP_AJ_G0011637	pseudogene	Chr2:49955257-49956477 (+)
AKR/J	MGP_AKRJ_G0011601	pseudogene	Chr2:51393720-51394144 (+)
BALB/cJ	MGP_BALBcJ_G0011617	pseudogene	Chr2:50059048-50059878 (+)
C3H/HeJ	MGP_C3HHeJ_G0011503	pseudogene	Chr2:51396697-51397113 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011474	pseudogene	Chr2:55523622-55524070 (+)
DBA/2J	MGP_DBA2J_G0010248	pseudogene	Chr1:129691389-129691751 (+)
FVB/NJ	MGP_FVBNJ_G0011532	pseudogene	Chr2:49292559-49292972 (+)
LP/J	MGP_LPJ_G0011596	pseudogene	Chr2:51862997-51863428 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011531	pseudogene	Chr2:56535092-56535547 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010136	pseudogene	Chr1:134323811-134324173 (+)

Homology

• Gene Tree
  Bloc1s2-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Bloc1s2-ps
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000025201 (Evidence)
• NCBI Gene
  625631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000025201	Ensembl Gene Model | MGI Sequence Detail	432	C57BL/6J
transcript	ENSMUST00000183232	Ensembl | MGI Sequence Detail	432	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Bloc1s2-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17728	Chr2:52509747-52509758 (+)	-13 bp