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H2bc23 Gene Detail
Summary
  • Symbol
    H2bc23
  • Name
    H2B clustered histone 23
  • Synonyms
    Gm13646, Hist1h2bq
  • Feature Type
    protein coding gene
  • IDs
    MGI:3702051
    NCBI Gene: 665596
  • Member of
    Hist1 cluster
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:21990782-21994367 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 7.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3702051
 protein coding gene Chr13:21990582-21994369 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020299
 protein coding gene Chr13:19067196-19116548 (+)
A/J MGP_AJ_G0020257
 protein coding gene Chr13:18645250-18702247 (+)
AKR/J MGP_AKRJ_G0020229
 protein coding gene Chr13:18979386-18984490 (-)
BALB/cJ MGP_BALBcJ_G0020244
 protein coding gene Chr13:18700668-18753022 (+)
C3H/HeJ MGP_C3HHeJ_G0020054
 protein coding gene Chr13:19050141-19117317 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020687
 protein coding gene Chr13:19810533-19814881 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018288
 protein coding gene Chr13:16900253-17009333 (+)
CAST/EiJ MGP_CASTEiJ_G0019573
 protein coding gene Chr13:18796931-18909994 (+)
CBA/J MGP_CBAJ_G0020008
 protein coding gene Chr13:20420825-20475155 (+)
DBA/2J MGP_DBA2J_G0020131
 protein coding gene Chr13:18275175-18346051 (+)
FVB/NJ MGP_FVBNJ_G0020117
 protein coding gene Chr13:17935675-17991098 (+)
LP/J MGP_LPJ_G0020201
 protein coding gene Chr13:19303531-19358833 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020150
 protein coding gene Chr13:20857972-20863341 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020717
 protein coding gene Chr13:18790707-20719349 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0019143
 protein coding gene Chr13:17704716-17804981 (+)
WSB/EiJ MGP_WSBEiJ_G0019630
 protein coding gene Chr13:18787811-18916226 (+)



Homology
more
  • Human Ortholog
    H2BC13, H2B clustered histone 13
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2BC13, H2B clustered histone 13
  • Synonyms
    dJ97D16.4, H2B/c, H2BFC, HIST1H2BL
  • Links
    NCBI Gene ID: 8340
    neXtProt AC: NX_Q99880
    UniProt: Q99880

  • Chr Location
    6p22.1; chr6:27807479-27807929 (-)  GRCh38
  • Human Ortholog
    H2BC9, H2B clustered histone 9
  • Synonyms
    H2BFJ, H2B/j, HIST1H2BH
  • Links
    NCBI Gene ID: 8345
    neXtProt AC: NX_Q93079
    UniProt: Q93079

  • Chr Location
    6p22.2; chr6:26251614-26252075 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving H2bc23
  • Find Mice (IMSR)
    3 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000069307 Ensembl Gene Model | MGI Sequence Detail 3586 C57BL/6J ±  kb
transcript ENSMUST00000091749 Ensembl | MGI Sequence Detail 1254 Not Applicable  
polypeptide ENSMUSP00000089343 Ensembl | MGI Sequence Detail 134 Not Applicable  
For the selected sequence
Molecular
Reagents
less

  • Microarray probesets 2
Other
Accession IDs
less
MGI:6384991
References
more
  • Summaries
    All 19
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory