Gm11769 Gene Detail

Summary

• Symbol
  Gm11769
• Name
  predicted gene 11769

• Feature Type
  lncRNA gene
• IDs
  MGI:3702101
  NCBI Gene: 102640588
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:120041388-120043167 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 83.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702101	lncRNA gene	Chr11:120041271-120043547 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015224	unclassified non-coding RNA gene	Chr11:124591154-124592917 (+)
A/J	MGP_AJ_G0015198	unclassified non-coding RNA gene	Chr11:119053914-119055689 (+)
AKR/J	MGP_AKRJ_G0015161	unclassified non-coding RNA gene	Chr11:122634537-122636316 (+)
BALB/cJ	MGP_BALBcJ_G0015160	unclassified non-coding RNA gene	Chr11:119410498-119412246 (+)
C3H/HeJ	MGP_C3HHeJ_G0014984	unclassified non-coding RNA gene	Chr11:122955293-122957074 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015617	unclassified non-coding RNA gene	Chr11:128364105-128365854 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013359	unclassified non-coding RNA gene	Chr11:116060490-116062256 (+)
CAST/EiJ	MGP_CASTEiJ_G0014537	unclassified non-coding RNA gene	Chr11:124442041-124443787 (+)
CBA/J	MGP_CBAJ_G0014963	unclassified non-coding RNA gene	Chr11:133376678-133378459 (+)
DBA/2J	MGP_DBA2J_G0015056	unclassified non-coding RNA gene	Chr11:118421032-118422813 (+)
FVB/NJ	MGP_FVBNJ_G0015067	unclassified non-coding RNA gene	Chr11:118113036-118114799 (+)
LP/J	MGP_LPJ_G0015137	unclassified non-coding RNA gene	Chr11:124899166-124900947 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015094	unclassified non-coding RNA gene	Chr11:132241127-132242906 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015656	unclassified non-coding RNA gene	Chr11:123319520-123321275 (+)
PWK/PhJ	MGP_PWKPhJ_G0014329	unclassified non-coding RNA gene	Chr11:119848885-119850645 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014116	unclassified non-coding RNA gene	Chr11:123089147-123090914 (+)
WSB/EiJ	MGP_WSBEiJ_G0014640	unclassified non-coding RNA gene	Chr11:123315663-123317428 (+)

Homology

• Gene Tree
  Gm11769
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085636 (Evidence)
• NCBI Gene
  102640588

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085636	Ensembl Gene Model | MGI Sequence Detail	1780	C57BL/6J
transcript	ENSMUST00000140273	Ensembl | MGI Sequence Detail	1657	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11769:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106270	Chr11:120041354-120041393 (+)	-14 bp