Gm13748 Gene Detail

Summary

• Symbol
  Gm13748
• Name
  predicted gene 13748

• Feature Type
  lncRNA gene
• IDs
  MGI:3702115
  NCBI Gene: 102639767
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:64117813-64129941 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 32.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  301 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702115	lncRNA gene	Chr1:64117813-64140362 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002695	antisense lncRNA gene	Chr1:64254507-64266616 (+)
A/J	MGP_AJ_G0002671	antisense lncRNA gene	Chr1:61983166-61995275 (+)
AKR/J	MGP_AKRJ_G0002651	antisense lncRNA gene	Chr1:63702953-63715028 (+)
BALB/cJ	MGP_BALBcJ_G0002657	antisense lncRNA gene	Chr1:62071800-62083928 (+)
C3H/HeJ	MGP_C3HHeJ_G0002617	antisense lncRNA gene	Chr1:63998023-64010132 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002801	antisense lncRNA gene	Chr1:66733398-66745524 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002348	antisense lncRNA gene	Chr1:58059104-58071224 (+)
CAST/EiJ	MGP_CASTEiJ_G0002589	antisense lncRNA gene	Chr1:63261509-63273722 (+)
CBA/J	MGP_CBAJ_G0002612	antisense lncRNA gene	Chr1:68895663-68910212 (+)
DBA/2J	MGP_DBA2J_G0002617	antisense lncRNA gene	Chr1:61403926-61416021 (+)
FVB/NJ	MGP_FVBNJ_G0002637	antisense lncRNA gene	Chr1:60680940-60693049 (+)
LP/J	MGP_LPJ_G0002697	antisense lncRNA gene	Chr1:65151389-65163498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002628	antisense lncRNA gene	Chr1:71790063-71802172 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002806	antisense lncRNA gene	Chr1:63705937-63718046 (+)
PWK/PhJ	MGP_PWKPhJ_G0002547	antisense lncRNA gene	Chr1:60774426-60786555 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002501	antisense lncRNA gene	Chr1:63206411-63218535 (+)
WSB/EiJ	MGP_WSBEiJ_G0002619	antisense lncRNA gene	Chr1:63410918-63423018 (+)

Homology

• Gene Tree
  Gm13748
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13748
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086836 (Evidence)
• NCBI Gene
  102639767

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086836	Ensembl Gene Model | MGI Sequence Detail	12129	C57BL/6J
transcript	ENSMUST00000149820	Ensembl | MGI Sequence Detail	378	Not Applicable

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm13748:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7078	Chr1:64127349-64127356 (+)	9,540 bp