Trav6-4 Gene Detail

Summary

• Symbol
  Trav6-4
• Name
  T cell receptor alpha variable 6-4
• Synonyms
  Gm13945

• Feature Type
  gene segment
• IDs
  MGI:3702153
  NCBI Gene: 100126463
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53691784-53692241 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702153	gene segment	Chr14:53691753-53692241 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002553	gene segment	Chr14:47371376-47371864 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0002485	gene segment	Chr14:47244034-47244522 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0002209	gene segment	Chr14:31354940-31355428 (+)
CAST/EiJ	MGP_CASTEiJ_G0002432	gene segment	Chr14:43937532-43938011 (+)
CBA/J	MGP_CBAJ_G0002461	gene segment	Chr14:50369168-50369647 (+)
DBA/2J	MGP_DBA2J_G0002470	gene segment	Chr14:45343252-45343731 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0002546	gene segment	Chr14:48241494-48242069 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0002662	gene segment	Chr14:47291461-47291949 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002346	gene segment	Chr14:42619391-42619879 (+)
WSB/EiJ	MGP_WSBEiJ_G0002464	gene segment	Chr14:46883237-46883716 (+)

Homology

• Human Ortholog
  TRAV9-2, T cell receptor alpha variable 9-2

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV9-2, T cell receptor alpha variable 9-2
  
• Synonyms
  TCRAV22S1, TCRAV9S2, TRAV92
• Links
  HGNC:12154

  NCBI Gene ID: 28677

  UniProt: A0A087WT02

  
  
• Chr Location
  14q11.2; chr14:21941128-21941657 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav6-4 stringent orthology
  1 human;1 mouse;2 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV9-2
• Gene Tree
  Trav6-4
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000094468 (Evidence)
• NCBI Gene
  100126463

Representative Sequences			Length	Strain/Species
genomic	100126463	NCBI Gene Model | MGI Sequence Detail	458	C57BL/6J
polypeptide	A0A075B6B4	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 9
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61