Gm12940 Gene Detail

Summary

• Symbol
  Gm12940
• Name
  predicted gene 12940

• Feature Type
  lncRNA gene
• IDs
  MGI:3702626
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:126927524-126943191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 61.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  330 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702626	lncRNA gene	Chr4:126927524-126943191 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015577	unclassified non-coding RNA gene	Chr4:128760950-128776796 (+)
A/J	MGP_AJ_G0015554	unclassified non-coding RNA gene	Chr4:123686829-123703271 (+)
AKR/J	MGP_AKRJ_G0015518	unclassified non-coding RNA gene	Chr4:127082170-127099568 (+)
BALB/cJ	MGP_BALBcJ_G0015516	unclassified non-coding RNA gene	Chr4:124252334-124268002 (+)
C3H/HeJ	MGP_C3HHeJ_G0015338	unclassified non-coding RNA gene	Chr4:127157232-127172885 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015969	unclassified non-coding RNA gene	Chr4:133647002-133665228 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013704	unclassified non-coding RNA gene	Chr4:116800409-116816885 (+)
CAST/EiJ	MGP_CASTEiJ_G0014893	unclassified non-coding RNA gene	Chr4:125268222-125285701 (+)
CBA/J	MGP_CBAJ_G0015319	unclassified non-coding RNA gene	Chr4:136891950-136913380 (+)
DBA/2J	MGP_DBA2J_G0015412	unclassified non-coding RNA gene	Chr4:124125691-124141353 (+)
FVB/NJ	MGP_FVBNJ_G0015420	unclassified non-coding RNA gene	Chr4:122788981-122804624 (+)
LP/J	MGP_LPJ_G0015493	unclassified non-coding RNA gene	Chr4:129031814-129049700 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015443	unclassified non-coding RNA gene	Chr4:141902940-141919304 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016011	unclassified non-coding RNA gene	Chr4:127445883-127463671 (+)
PWK/PhJ	MGP_PWKPhJ_G0014678	unclassified non-coding RNA gene	Chr4:120624146-120640162 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014466	unclassified non-coding RNA gene	Chr4:123272852-123288280 (+)
WSB/EiJ	MGP_WSBEiJ_G0014998	unclassified non-coding RNA gene	Chr4:127562366-127578019 (+)

Homology

• Gene Tree
  Gm12940
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12940
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000085334 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085334	Ensembl Gene Model | MGI Sequence Detail	15668	C57BL/6J
transcript	ENSMUST00000137236	Ensembl | MGI Sequence Detail	1970	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39039	Chr4:126928892-126928908 (+)	1,376 bp
Tssr39040	Chr4:126929461-126929471 (+)	1,942 bp