Gm12992 Gene Detail

Summary

• Symbol
  Gm12992
• Name
  predicted gene 12992

• Feature Type
  lncRNA gene
• IDs
  MGI:3702644
  NCBI Gene: 545681
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:131626789-131647340 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 64.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  619 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702644	lncRNA gene	Chr4:131626789-131647340 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015578	unclassified non-coding RNA gene	Chr4:134013678-134035165 (-)
A/J	MGP_AJ_G0015555	unclassified non-coding RNA gene	Chr4:128444753-128465226 (-)
AKR/J	MGP_AKRJ_G0015519	unclassified non-coding RNA gene	Chr4:132041861-132067382 (-)
BALB/cJ	MGP_BALBcJ_G0015517	unclassified non-coding RNA gene	Chr4:129058581-129079197 (-)
C3H/HeJ	MGP_C3HHeJ_G0015339	unclassified non-coding RNA gene	Chr4:132292920-132314069 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015970	unclassified non-coding RNA gene	Chr4:138829254-138852188 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013705	unclassified non-coding RNA gene	Chr4:121540333-121561922 (-)
CAST/EiJ	MGP_CASTEiJ_G0014894	unclassified non-coding RNA gene	Chr4:130361298-130382938 (-)
CBA/J	MGP_CBAJ_G0015320	unclassified non-coding RNA gene	Chr4:142375806-142403738 (-)
DBA/2J	MGP_DBA2J_G0015413	unclassified non-coding RNA gene	Chr4:128868614-128889326 (-)
FVB/NJ	MGP_FVBNJ_G0015421	unclassified non-coding RNA gene	Chr4:127719130-127739825 (-)
LP/J	MGP_LPJ_G0015494	unclassified non-coding RNA gene	Chr4:134170927-134193480 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015444	unclassified non-coding RNA gene	Chr4:147016557-147038065 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016012	unclassified non-coding RNA gene	Chr4:132437760-132460764 (-)
PWK/PhJ	MGP_PWKPhJ_G0014679	unclassified non-coding RNA gene	Chr4:125538028-125559117 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014467	unclassified non-coding RNA gene	Chr4:128321006-128341473 (-)
WSB/EiJ	MGP_WSBEiJ_G0014999	unclassified non-coding RNA gene	Chr4:132614850-132637978 (-)

Homology

• Gene Tree
  Gm12992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12992
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000085667 (Evidence)
• NCBI Gene
  545681

Representative Sequences			Length	Strain/Species
genomic	545681	NCBI Gene Model | MGI Sequence Detail	20552	C57BL/6J
transcript	NR_102393	RefSeq | MGI Sequence Detail	4493	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm12992:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43616	Chr4:131648013-131648018 (-)	-676 bp