Gm13008 Gene Detail

Summary

• Symbol
  Gm13008
• Name
  predicted gene 13008

• Feature Type
  lncRNA gene
• IDs
  MGI:3702670
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:135730877-135738248 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 68.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702670	lncRNA gene	Chr4:135730877-135738248 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003974	antisense lncRNA gene	Chr4:138502366-138511059 (+)
A/J	MGP_AJ_G0003955	antisense lncRNA gene	Chr4:132621826-132629567 (+)
AKR/J	MGP_AKRJ_G0003932	antisense lncRNA gene	Chr4:136457773-136465526 (+)
BALB/cJ	MGP_BALBcJ_G0003941	antisense lncRNA gene	Chr4:133293150-133300756 (+)
C3H/HeJ	MGP_C3HHeJ_G0003888	antisense lncRNA gene	Chr4:136734000-136742420 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004089	antisense lncRNA gene	Chr4:143414915-143423036 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003576	antisense lncRNA gene	Chr4:125672188-125679378 (+)
CAST/EiJ	MGP_CASTEiJ_G0003851	antisense lncRNA gene	Chr4:134873309-134881224 (+)
CBA/J	MGP_CBAJ_G0003881	antisense lncRNA gene	Chr4:147361206-147368019 (+)
DBA/2J	MGP_DBA2J_G0003897	antisense lncRNA gene	Chr4:133053633-133060845 (+)
FVB/NJ	MGP_FVBNJ_G0003916	antisense lncRNA gene	Chr4:131975048-131983060 (+)
LP/J	MGP_LPJ_G0003977	antisense lncRNA gene	Chr4:138600654-138607482 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003904	antisense lncRNA gene	Chr4:151626730-151633896 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004084	antisense lncRNA gene	Chr4:136907914-136915233 (+)
PWK/PhJ	MGP_PWKPhJ_G0003805	antisense lncRNA gene	Chr4:129821157-129828089 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003751	antisense lncRNA gene	Chr4:132725194-132734541 (+)
WSB/EiJ	MGP_WSBEiJ_G0003887	antisense lncRNA gene	Chr4:137080840-137088633 (+)

Homology

• Gene Tree
  Gm13008
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Gm13008
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000085714 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085714	Ensembl Gene Model | MGI Sequence Detail	7372	C57BL/6J
transcript	ENSMUST00000142289	Ensembl | MGI Sequence Detail	507	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8