Tdpoz9-ps1 Pseudogene Detail

Summary

• Symbol
  Tdpoz9-ps1
• Name
  TD and POZ domain containing 9, pseudogene 1
• Synonyms
  Gm9117

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3704095
  NCBI Gene: 668346
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:93843933-93850823 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704095	pseudogene	Chr3:93843933-93850850 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• MGI Vertebrate Homology
  Tdpoz9-ps1 stringent orthology
  1 mouse;7 rat;1 zebrafish
  
• Gene Tree
  Tdpoz9-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Tdpoz9-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000095822 (Evidence)
• NCBI Gene
  668346

Representative Sequences			Length	Strain/Species
genomic	668346	NCBI Gene Model | MGI Sequence Detail	6891	C57BL/6J
polypeptide	P0DMR6	UniProt | EBI | MGI Sequence Detail	365	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR000210 BTB/POZ domain
  IPR002083 MATH/TRAF domain
  IPR011333 SKP1/BTB/POZ domain superfamily
  IPR008974 TRAF-like

Other
Accession IDs

MGI:6392902

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426