Gm10518 Gene Detail

Summary

• Symbol
  Gm10518
• Name
  predicted gene 10518

• Feature Type
  lncRNA gene
• IDs
  MGI:3704205
  NCBI Gene: 100040914
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:179630941-179632241 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 83.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704205	lncRNA gene	Chr1:179630941-179632241 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016864	protein coding gene	Chr1:186186995-186188295 (+)
A/J	MGP_AJ_G0016843	protein coding gene	Chr1:178677232-178678532 (+)
AKR/J	MGP_AKRJ_G0016809	protein coding gene	Chr1:183991137-183992435 (+)
BALB/cJ	MGP_BALBcJ_G0016801	protein coding gene	Chr1:179308779-179310079 (+)
C3H/HeJ	MGP_C3HHeJ_G0016626	protein coding gene	Chr1:184749016-184750316 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017264	protein coding gene	Chr1:192219174-192220474 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014972	protein coding gene	Chr1:169665503-169666820 (+)
CAST/EiJ	MGP_CASTEiJ_G0016207	protein coding gene	Chr1:184052742-184054044 (+)
CBA/J	MGP_CBAJ_G0016600	protein coding gene	Chr1:199373154-199374454 (+)
DBA/2J	MGP_DBA2J_G0016706	protein coding gene	Chr1:177520057-177521357 (+)
FVB/NJ	MGP_FVBNJ_G0016702	protein coding gene	Chr1:175606499-175607799 (+)
LP/J	MGP_LPJ_G0016780	protein coding gene	Chr1:187460469-187461769 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016733	protein coding gene	Chr1:206525815-206527115 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017301	protein coding gene	Chr1:183737894-183739194 (+)
PWK/PhJ	MGP_PWKPhJ_G0015995	protein coding gene	Chr1:176602969-176604269 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015771	protein coding gene	Chr1:182681774-182683070 (+)
WSB/EiJ	MGP_WSBEiJ_G0016270	protein coding gene	Chr1:183960786-183962086 (+)

Homology

• Gene Tree
  Gm10518
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  4
• Genomic Mutations
  2 involving Gm10518
• Find Mice (IMSR)
  8 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000073486 (Evidence)
• NCBI Gene
  100040914

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073486	Ensembl Gene Model | MGI Sequence Detail	1301	C57BL/6J
transcript	ENSMUST00000097454	Ensembl | MGI Sequence Detail	1301	Not Applicable
polypeptide	Q3V0X8	UniProt | EBI | MGI Sequence Detail	182	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm10518:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10430	Chr1:179631039-179631042 (+)	100 bp