Gm9790 Pseudogene Detail

Summary

• Symbol
  Gm9790
• Name
  predicted gene 9790

• Feature Type
  pseudogene
• IDs
  MGI:3704221
  NCBI Gene: 100042265
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:85823090-85823377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 37.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704221	pseudogene	Chr3:85823015-85823476 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012252	pseudogene	Chr3:85937319-85937606 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0012213	pseudogene	Chr3:85007909-85008196 (+)
BALB/cJ	MGP_BALBcJ_G0012227	pseudogene	Chr3:83118548-83118835 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012542	pseudogene	Chr3:89122550-89122837 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012780	pseudogene	ChrX:90735671-90735938 (+)
CAST/EiJ	MGP_CASTEiJ_G0011873	pseudogene	Chr3:85527039-85527326 (+)
CBA/J	MGP_CBAJ_G0012074	pseudogene	Chr3:92101666-92101942 (+)
DBA/2J	MGP_DBA2J_G0012131	pseudogene	Chr3:82531170-82531457 (+)
FVB/NJ	MGP_FVBNJ_G0012134	pseudogene	Chr3:80835965-80836252 (+)
LP/J	MGP_LPJ_G0012200	pseudogene	Chr3:86874645-86874932 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012135	pseudogene	Chr3:98369521-98369808 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012547	pseudogene	Chr3:84808915-84809165 (+)
PWK/PhJ	MGP_PWKPhJ_G0013861	pseudogene	ChrX:75216012-75216279 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011746	pseudogene	Chr3:158537915-158538183 (-)
WSB/EiJ	MGP_WSBEiJ_G0011903	pseudogene	Chr3:85181111-85181398 (+)

Homology

• Gene Tree
  Gm9790
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9790
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000044330 (Evidence)
• NCBI Gene
  100042265

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044330	Ensembl Gene Model | MGI Sequence Detail	288	C57BL/6J
transcript	ENSMUST00000054148	Ensembl | MGI Sequence Detail	288	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9790:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29769	Chr3:85823010-85823042 (+)	-64 bp