Gm10564 Gene Detail

Summary

• Symbol
  Gm10564
• Name
  predicted gene 10564

• Feature Type
  lncRNA gene
• IDs
  MGI:3704240
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:155126503-155129879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 86.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704240	lncRNA gene	Chr4:155126503-155129879 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004019	antisense lncRNA gene	Chr4:159328955-159332320 (+)
A/J	MGP_AJ_G0004000	antisense lncRNA gene	Chr4:152649045-152652422 (+)
AKR/J	MGP_AKRJ_G0003977	antisense lncRNA gene	Chr4:156805551-156808928 (+)
BALB/cJ	MGP_BALBcJ_G0003986	antisense lncRNA gene	Chr4:153119618-153123001 (+)
C3H/HeJ	MGP_C3HHeJ_G0003933	antisense lncRNA gene	Chr4:157339694-157343071 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004135	antisense lncRNA gene	Chr4:165028055-165031432 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003616	antisense lncRNA gene	Chr4:144948224-144951636 (+)
CAST/EiJ	MGP_CASTEiJ_G0003896	antisense lncRNA gene	Chr4:154771485-154774856 (+)
CBA/J	MGP_CBAJ_G0003926	antisense lncRNA gene	Chr4:169966232-169969609 (+)
DBA/2J	MGP_DBA2J_G0003942	antisense lncRNA gene	Chr4:152670056-152673433 (+)
FVB/NJ	MGP_FVBNJ_G0003961	antisense lncRNA gene	Chr4:151899620-151903291 (+)
LP/J	MGP_LPJ_G0004022	antisense lncRNA gene	Chr4:159255444-159258825 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003949	antisense lncRNA gene	Chr4:172839792-172843169 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004129	antisense lncRNA gene	Chr4:157404280-157407663 (+)
PWK/PhJ	MGP_PWKPhJ_G0003850	antisense lncRNA gene	Chr4:148793809-148797191 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003795	antisense lncRNA gene	Chr4:151682927-151686459 (+)
WSB/EiJ	MGP_WSBEiJ_G0003932	antisense lncRNA gene	Chr4:157566265-157569642 (+)

Homology

• Gene Tree
  Gm10564
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm10564
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000073686 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073686	Ensembl Gene Model | MGI Sequence Detail	3377	C57BL/6J
transcript	ENSMUST00000097750	Ensembl | MGI Sequence Detail	3113	Not Applicable
polypeptide	Q3UN64	UniProt | EBI | MGI Sequence Detail	222	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16