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5930411N13Rik Gene Detail
Summary
  • Symbol
    5930411N13Rik
  • Name
    RIKEN cDNA 5930411N13 gene
  • Synonyms
    Gm43137
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3704253
    NCBI Gene: 118568795
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:110378474-110379067 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704253
 lncRNA gene Chr5:110374259-110379067 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004136
 antisense lncRNA gene Chr5:112672869-112673462 (-)
A/J MGP_AJ_G0004115
 antisense lncRNA gene Chr5:108307791-108308384 (-)
AKR/J MGP_AKRJ_G0004096
 antisense lncRNA gene Chr5:111758361-111758954 (-)
BALB/cJ MGP_BALBcJ_G0004102
 antisense lncRNA gene Chr5:109678582-109679175 (-)
C3H/HeJ MGP_C3HHeJ_G0004050
 antisense lncRNA gene Chr5:112185161-112185754 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004250
 antisense lncRNA gene Chr5:117119642-117120235 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003727
 antisense lncRNA gene Chr5:103136715-103137313 (-)
CAST/EiJ MGP_CASTEiJ_G0004012
 antisense lncRNA gene Chr5:111045923-111046516 (-)
CBA/J MGP_CBAJ_G0004044
 antisense lncRNA gene Chr5:121524020-121524613 (-)
DBA/2J MGP_DBA2J_G0004059
 antisense lncRNA gene Chr5:108374502-108375095 (-)
FVB/NJ MGP_FVBNJ_G0004076
 antisense lncRNA gene Chr5:107050315-107050908 (-)
LP/J MGP_LPJ_G0004137
 antisense lncRNA gene Chr5:113234294-113234887 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004065
 antisense lncRNA gene Chr5:126169185-126169778 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004247
 antisense lncRNA gene Chr5:111191102-111191695 (-)
PWK/PhJ MGP_PWKPhJ_G0003965
 antisense lncRNA gene Chr5:106964072-106964665 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003909
 antisense lncRNA gene Chr5:108656473-108657066 (-)
WSB/EiJ MGP_WSBEiJ_G0004048
 antisense lncRNA gene Chr5:111642852-111643445 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 5930411N13Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000104970 Ensembl Gene Model | MGI Sequence Detail 594 C57BL/6J ±  kb
transcript ENSMUST00000198052 Ensembl | MGI Sequence Detail 594 Not Applicable  
polypeptide Q3UYZ3 UniProt | EBI | MGI Sequence Detail 175 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
Other
Accession IDs
less
MGI:5663274
References
more
  • Summaries
    All 18
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory