Gm10167 Pseudogene Detail

Summary

• Symbol
  Gm10167
• Name
  predicted pseudogene 10167

• Feature Type
  pseudogene
• IDs
  MGI:3704263
  NCBI Gene: 100534385
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:148119709-148121187 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 88.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704263	pseudogene	Chr5:148119549-148121191 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013327	pseudogene	Chr5:153910708-153912295 (-)
A/J	MGP_AJ_G0013309	pseudogene	Chr5:147351625-147353541 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013287	pseudogene	Chr5:148592099-148594847 (-)
C3H/HeJ	MGP_C3HHeJ_G0013135	pseudogene	Chr5:152877219-152879582 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013656	pseudogene	Chr5:159575219-159576697 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012217	pseudogene	Chr7:98194644-98196096 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013104	pseudogene	Chr5:166227499-166228977 (-)
DBA/2J	MGP_DBA2J_G0013189	pseudogene	Chr5:147037472-147039427 (-)
FVB/NJ	MGP_FVBNJ_G0013185	pseudogene	Chr5:146245797-146250298 (-)
LP/J	MGP_LPJ_G0013257	pseudogene	Chr5:154601303-154602781 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013204	pseudogene	Chr5:168435163-168436641 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013659	pseudogene	Chr5:151826581-151828059 (-)
PWK/PhJ	MGP_PWKPhJ_G0013244	pseudogene	Chr7:87097819-87102070 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013009	pseudogene	Chr7:84523383-84524831 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10167
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000066554 (Evidence)
• NCBI Gene
  100534385

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066554	Ensembl Gene Model | MGI Sequence Detail	1479	C57BL/6J
transcript	ENSMUST00000150411	Ensembl | MGI Sequence Detail	1479	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10167:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54548	Chr5:148121173-148121197 (-)	2 bp