Gm10644 Gene Detail

Summary

• Symbol
  Gm10644
• Name
  predicted gene 10644

• Feature Type
  lncRNA gene
• IDs
  MGI:3704314
  NCBI Gene: 100126034
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:84658956-84681962 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 40.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704314	lncRNA gene	Chr8:84658956-84681972 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0033842	protein coding gene	Chr8:84791922-84815048 (-)
A/J	MGP_AJ_G0033825	protein coding gene	Chr8:81473845-81495509 (-)
AKR/J	MGP_AKRJ_G0033751	protein coding gene	Chr8:83875706-83897168 (-)
BALB/cJ	MGP_BALBcJ_G0033818	protein coding gene	Chr8:81579289-81600763 (-)
C3H/HeJ	MGP_C3HHeJ_G0033528	protein coding gene	Chr8:84492352-84513981 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0034338	protein coding gene	Chr8:88024033-88048149 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031280	protein coding gene	Chr8:75271983-75276007 (-)
CAST/EiJ	MGP_CASTEiJ_G0032858	protein coding gene	Chr8:83904511-83927858 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0033659	protein coding gene	Chr8:81110455-81131934 (-)
FVB/NJ	MGP_FVBNJ_G0033605	protein coding gene	Chr8:80032059-80054909 (-)
LP/J	MGP_LPJ_G0033749	protein coding gene	Chr8:84905904-84929139 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033647	protein coding gene	Chr8:93667404-93689492 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034355	protein coding gene	Chr8:83855973-83878539 (-)
PWK/PhJ	MGP_PWKPhJ_G0032562	protein coding gene	Chr8:80328817-80352511 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0032399	protein coding gene	Chr8:82660471-82686162 (-)
WSB/EiJ	MGP_WSBEiJ_G0032971	protein coding gene	Chr8:84264261-84287343 (-)

Homology

• Gene Tree
  Gm10644
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10644
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074219 (Evidence)
• NCBI Gene
  100126034

Representative Sequences			Length	Strain/Species
genomic	100126034	NCBI Gene Model | MGI Sequence Detail	23007	C57BL/6J
transcript	NR_169070	RefSeq | MGI Sequence Detail	2928	C57BL/6
polypeptide	Q3TZG3	UniProt | EBI | MGI Sequence Detail	87	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;