Rps26-ps1 Pseudogene Detail

Summary

• Symbol
  Rps26-ps1
• Name
  ribosomal protein S26, pseudogene 1
• Synonyms
  Gm10070

• Feature Type
  pseudogene
• IDs
  MGI:3704322
  NCBI Gene: 100042812
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:108165846-108166196 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 54.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704322	pseudogene	Chr8:108165782-108166217 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0019715	protein coding gene	Chr12:46497292-46497759 (+)
A/J	MGP_AJ_G0019679	protein coding gene	Chr12:44822346-44822808 (+)
AKR/J	MGP_AKRJ_G0019650	protein coding gene	Chr12:46200616-46201078 (+)
BALB/cJ	MGP_BALBcJ_G0019657	protein coding gene	Chr12:45107064-45107521 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0030562	protein coding gene	Chr6:149685921-149686335 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0019546	protein coding gene	Chr12:44667648-44668143 (+)
FVB/NJ	MGP_FVBNJ_G0019535	protein coding gene	Chr12:44180980-44181442 (+)
LP/J	MGP_LPJ_G0031395	protein coding gene	Chr6:151767724-151768158 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019571	protein coding gene	Chr12:50634794-50635906 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034614	protein coding gene	Chr8:108493247-108493573 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0030655	protein coding gene	Chr6:150447873-150451837 (-)

Homology

• Gene Tree
  Rps26-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000059775 (Evidence)
• NCBI Gene
  100042812

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059775	Ensembl Gene Model | MGI Sequence Detail	351	C57BL/6J
transcript	ENSMUST00000212102	Ensembl | MGI Sequence Detail	351	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Rps26-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82800	Chr8:108166217-108166225 (-)	-25 bp