Gm10642 Gene Detail

Summary

• Symbol
  Gm10642
• Name
  predicted gene 10642

• Feature Type
  lncRNA gene
• IDs
  MGI:3704338
  NCBI Gene: 100379146
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:70563533-70565144 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 39.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704338	lncRNA gene	Chr9:70563533-70565144 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035003	protein coding gene	Chr9:70763548-70765155 (+)
A/J	MGP_AJ_G0034984	protein coding gene	Chr9:68288823-68290432 (+)
AKR/J	MGP_AKRJ_G0034913	protein coding gene	Chr9:69899685-69901294 (+)
BALB/cJ	MGP_BALBcJ_G0034976	protein coding gene	Chr9:68002256-68003865 (+)
C3H/HeJ	MGP_C3HHeJ_G0034685	protein coding gene	Chr9:70428738-70430347 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035495	protein coding gene	Chr9:72623596-72625205 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032406	protein coding gene	Chr9:67824976-67826583 (+)
CAST/EiJ	MGP_CASTEiJ_G0034007	protein coding gene	Chr9:70700206-70701816 (+)
CBA/J	MGP_CBAJ_G0034658	protein coding gene	Chr9:75150472-75152081 (+)
DBA/2J	MGP_DBA2J_G0034817	protein coding gene	Chr9:68029290-68030899 (+)
FVB/NJ	MGP_FVBNJ_G0034759	protein coding gene	Chr9:67353630-67355607 (+)
LP/J	MGP_LPJ_G0034898	protein coding gene	Chr9:70993138-70994743 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034800	protein coding gene	Chr9:76228906-76230516 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035517	protein coding gene	Chr9:70057332-70058941 (+)
PWK/PhJ	MGP_PWKPhJ_G0033711	protein coding gene	Chr9:68268957-68270632 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033544	protein coding gene	Chr9:70352569-70354190 (+)
WSB/EiJ	MGP_WSBEiJ_G0034119	protein coding gene	Chr9:69958776-69960399 (+)

Homology

• Gene Tree
  Gm10642
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10642
• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074213 (Evidence)
• NCBI Gene
  100379146

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074213	Ensembl Gene Model | MGI Sequence Detail	1612	C57BL/6J
transcript	ENSMUST00000238671	Ensembl | MGI Sequence Detail	1612	Not Applicable
polypeptide	Q3TWM1	UniProt | EBI | MGI Sequence Detail	71	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm10642:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85924	Chr9:70563511-70563527 (+)	-14 bp
Tssr85925	Chr9:70563530-70563543 (+)	4 bp