Gm9923 Pseudogene Detail

Summary

• Symbol
  Gm9923
• Name
  predicted pseudogene 9923

• Feature Type
  pseudogene
• IDs
  MGI:3704365
  NCBI Gene: 100040505
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:72145151-72146986 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 37.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704365	pseudogene	Chr10:72145031-72147868 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017060	protein coding gene	Chr10:19103760-19107757 (+)
A/J	MGP_AJ_G0017038	protein coding gene	Chr10:18371691-18374003 (+)
AKR/J	MGP_AKRJ_G0017002	protein coding gene	Chr10:18702133-18708585 (+)
BALB/cJ	MGP_BALBcJ_G0016996	protein coding gene	Chr10:18422951-18437989 (+)
C3H/HeJ	MGP_C3HHeJ_G0016821	protein coding gene	Chr10:19012559-19028384 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017458	protein coding gene	Chr10:19591933-19595985 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015163	protein coding gene	Chr10:17328787-17343051 (+)
CAST/EiJ	MGP_CASTEiJ_G0016403	protein coding gene	Chr10:18947061-18950507 (+)
CBA/J	MGP_CBAJ_G0016793	protein coding gene	Chr10:20491533-20498497 (+)
DBA/2J	MGP_DBA2J_G0016901	protein coding gene	Chr10:18249787-18253418 (+)
FVB/NJ	MGP_FVBNJ_G0016896	protein coding gene	Chr10:17989569-17996550 (+)
LP/J	MGP_LPJ_G0016976	protein coding gene	Chr10:18888726-18890927 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016926	protein coding gene	Chr10:20685505-20691707 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017496	protein coding gene	Chr10:18686562-18694103 (+)
PWK/PhJ	MGP_PWKPhJ_G0016188	protein coding gene	Chr10:18144677-18160372 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015971	protein coding gene	Chr10:18845999-18861460 (+)
WSB/EiJ	MGP_WSBEiJ_G0016465	protein coding gene	Chr10:18782646-18789180 (+)

Homology

• Gene Tree
  Gm9923
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9923
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000053830 (Evidence)
• NCBI Gene
  100040505

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053830	Ensembl Gene Model | MGI Sequence Detail	1836	C57BL/6J
transcript	ENSMUST00000217785	Ensembl | MGI Sequence Detail	1836	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87