About   Help   FAQ
Trav12d-3 Gene Detail
Summary
  • Symbol
    Trav12d-3
  • Name
    T cell receptor alpha variable 12D-3
  • Synonyms
    ENSMUSG00000072545
  • Feature Type
    gene segment
  • IDs
    MGI:3704434
    NCBI Gene: 667542
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53167246-53167739 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    10
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704434
 gene segment Chr14:53167246-53167739 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002548
 gene segment Chr14:47190743-47191302 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002653
 gene segment Chr14:49935734-49936227 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002461
 gene segment Chr14:44260077-44262258 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002516
 gene segment Chr14:45830874-45831338 (+)
LP/J MGP_LPJ_G0002560
 gene segment Chr14:48476320-48476824 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002470
 gene segment Chr14:50353726-50812309 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002652
 gene segment Chr14:47046845-47474129 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002369
 gene segment Chr14:43170686-43481703 (-)
WSB/EiJ MGP_WSBEiJ_G0002448
 gene segment Chr10:32562353-32565382 (+)



Homology
more
  • Human Ortholog
    TRAV18, T cell receptor alpha variable 18
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV18, T cell receptor alpha variable 18
  • Synonyms
    TCRAV18S1
  • Links
    NCBI Gene ID: 28665
    UniProt: A0A075B6X5

  • Chr Location
    14q11.2; chr14:22003106-22003673 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 667542 NCBI Gene Model | MGI Sequence Detail 494 C57BL/6J ±  kb
polypeptide A0A075B6A4 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 9
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory