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Trav7n-6 Gene Detail
Summary
  • Symbol
    Trav7n-6
  • Name
    T cell receptor alpha variable 7N-6
  • Synonyms
    ENSMUSG00000072519, Gm10905
Location &
Maps
more
  • Sequence Map
    Chr14:53562133-53562665 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704442
 gene segment Chr14:53562089-53562665 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002540
 gene segment Chr14:47001576-47002152 (+)
A/J MGP_AJ_G0002508
 gene segment Chr14:45876860-45877436 (+)
AKR/J MGP_AKRJ_G0002496
 gene segment Chr14:47520833-47521409 (+)
BALB/cJ MGP_BALBcJ_G0002501
 gene segment Chr14:45952137-45952681 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002228
 gene segment Chr14:45092602-45093177 (-)
CAST/EiJ MGP_CASTEiJ_G0002472
 gene segment Chr14:44345827-44346403 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002480
 gene segment Chr14:45624016-45624592 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002462
 gene segment Chr14:50123978-50124554 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002637
 gene segment Chr14:46847552-46848128 (+)
PWK/PhJ MGP_PWKPhJ_G0002419
 gene segment Chr14:42344653-42345229 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002380
 gene segment Chr14:43363608-43364184 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965451-21966061 (+)  GRCh38
Gene Ontology
(GO)
Classifications
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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126457 NCBI Gene Model | MGI Sequence Detail 533 C57BL/6J ±  kb
polypeptide A0A0B4J1N1 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
References
more
  • Summaries
    All 8
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory