Gm9816 Pseudogene Detail

Summary

• Symbol
  Gm9816
• Name
  predicted pseudogene 9816

• Feature Type
  pseudogene
• IDs
  MGI:3704465
  NCBI Gene: 100043806
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:62537400-62538813 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 36.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704465	pseudogene	Chr16:62537318-62539173 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010888	pseudogene	Chr11:125278300-125287756 (+)
A/J	MGP_AJ_G0010886	pseudogene	Chr11:119698277-119700724 (+)
AKR/J	MGP_AKRJ_G0010846	pseudogene	Chr11:123317805-123320087 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010765	pseudogene	Chr11:123645728-123649152 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009745	pseudogene	Chr11:116685624-116689225 (+)
CAST/EiJ	MGP_CASTEiJ_G0010590	pseudogene	Chr11:125146994-125150610 (+)
CBA/J	MGP_CBAJ_G0010736	pseudogene	Chr11:134103142-134105589 (+)
DBA/2J	MGP_DBA2J_G0010783	pseudogene	Chr11:119067528-119071903 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010871	pseudogene	Chr11:125573473-125580059 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010776	pseudogene	Chr11:132933016-132937239 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011115	pseudogene	Chr11:123986251-123987492 (+)
PWK/PhJ	MGP_PWKPhJ_G0010480	pseudogene	Chr11:120505301-120508923 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010296	pseudogene	Chr11:123750664-123754266 (+)
WSB/EiJ	MGP_WSBEiJ_G0010641	pseudogene	Chr11:123976944-123980550 (+)

Homology

• Gene Tree
  Gm9816
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000085783 (Evidence)
• NCBI Gene
  100043806

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085783	Ensembl Gene Model | MGI Sequence Detail	1414	C57BL/6J
transcript	ENSMUST00000122292	Ensembl | MGI Sequence Detail	1414	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;