Gm15200 Gene Detail

Summary

• Symbol
  Gm15200
• Name
  predicted gene 15200

• Feature Type
  lncRNA gene
• IDs
  MGI:3705136
  NCBI Gene: 100502608
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:42574032-42574514 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 22.89 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705136	lncRNA gene	Chr10:42574032-42574514 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002852	antisense lncRNA gene	Chr10:41425101-41425583 (-)
A/J	MGP_AJ_G0002829	antisense lncRNA gene	Chr10:40262609-40263091 (-)
AKR/J	MGP_AKRJ_G0002809	antisense lncRNA gene	Chr10:40873350-40873832 (-)
BALB/cJ	MGP_BALBcJ_G0002816	antisense lncRNA gene	Chr10:40320302-40320784 (-)
C3H/HeJ	MGP_C3HHeJ_G0002773	antisense lncRNA gene	Chr10:41222902-41223384 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002958	antisense lncRNA gene	Chr10:42683894-42684376 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002502	antisense lncRNA gene	Chr10:38118684-38119137 (-)
CAST/EiJ	MGP_CASTEiJ_G0002745	antisense lncRNA gene	Chr10:41421940-41422404 (-)
CBA/J	MGP_CBAJ_G0002768	antisense lncRNA gene	Chr10:44686327-44686809 (-)
DBA/2J	MGP_DBA2J_G0002775	antisense lncRNA gene	Chr10:39749260-39749742 (-)
FVB/NJ	MGP_FVBNJ_G0002795	antisense lncRNA gene	Chr10:39238252-39238734 (-)
LP/J	MGP_LPJ_G0002851	antisense lncRNA gene	Chr10:41433839-41434321 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002785	antisense lncRNA gene	Chr10:45388992-45389474 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002962	antisense lncRNA gene	Chr10:40856602-40857084 (-)
PWK/PhJ	MGP_PWKPhJ_G0002703	antisense lncRNA gene	Chr10:39618010-39618474 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002653	antisense lncRNA gene	Chr10:40688406-40688889 (-)
WSB/EiJ	MGP_WSBEiJ_G0002774	antisense lncRNA gene	Chr10:41162942-41163424 (-)

Homology

• Gene Tree
  Gm15200
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15200
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086434 (Evidence)
• NCBI Gene
  100502608

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086434	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000149950	Ensembl | MGI Sequence Detail	410	Not Applicable

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15200:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97451	Chr10:42575075-42575086 (-)	-567 bp