Gm15478 Gene Detail

Summary

• Symbol
  Gm15478
• Name
  predicted gene 15478

• Feature Type
  lncRNA gene
• IDs
  MGI:3705145
  NCBI Gene: 100042458
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:67799744-67804119 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 36.17 cM

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705145	lncRNA gene	Chr5:67797205-67804131 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004094	antisense lncRNA gene	Chr5:67425795-67430352 (+)
A/J	MGP_AJ_G0004075	antisense lncRNA gene	Chr5:64904812-64909193 (+)
AKR/J	MGP_AKRJ_G0004053	antisense lncRNA gene	Chr5:66980408-66984786 (+)
BALB/cJ	MGP_BALBcJ_G0004061	antisense lncRNA gene	Chr5:65575914-65580285 (+)
C3H/HeJ	MGP_C3HHeJ_G0004007	antisense lncRNA gene	Chr5:67301231-67306468 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004209	antisense lncRNA gene	Chr5:70209247-70216880 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003686	antisense lncRNA gene	Chr5:60945116-60950240 (+)
CAST/EiJ	MGP_CASTEiJ_G0003970	antisense lncRNA gene	Chr5:66501123-66505499 (+)
CBA/J	MGP_CBAJ_G0004001	antisense lncRNA gene	Chr5:72461116-72465468 (+)
DBA/2J	MGP_DBA2J_G0004016	antisense lncRNA gene	Chr5:64913680-64918074 (+)
FVB/NJ	MGP_FVBNJ_G0004035	antisense lncRNA gene	Chr5:64085936-64090345 (+)
LP/J	MGP_LPJ_G0004096	antisense lncRNA gene	Chr5:67919732-67924090 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004024	antisense lncRNA gene	Chr5:75260617-75264977 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004205	antisense lncRNA gene	Chr5:66646783-66651142 (+)
PWK/PhJ	MGP_PWKPhJ_G0003923	antisense lncRNA gene	Chr5:63956762-63961086 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003868	antisense lncRNA gene	Chr5:65981127-65985483 (+)
WSB/EiJ	MGP_WSBEiJ_G0004005	antisense lncRNA gene	Chr5:66877257-66881590 (+)

Homology

• Gene Tree
  Gm15478
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm15478
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000085363 (Evidence)
• NCBI Gene
  100042458

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085363	Ensembl Gene Model | MGI Sequence Detail	4376	C57BL/6J
transcript	ENSMUST00000145914	Ensembl | MGI Sequence Detail	2172	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 24

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm15478:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46595	Chr5:67799511-67799545 (+)	-216 bp