Gm14963 MGI Mouse Gene Detail - MGI:3705162

Symbol

Gm14963
Name

predicted gene 14963

Feature Type

lncRNA gene
IDs

MGI:3705162
NCBI Gene: 105246847
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr19:6318824-6326608 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 4.39 cM

SNPs within 2kb

239 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705162	lncRNA gene	Chr19:6318824-6326635 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015377	unclassified non-coding RNA gene	Chr19:3314475-3323118 (-)
A/J	MGP_AJ_G0015351	unclassified non-coding RNA gene	Chr19:3133587-3141247 (-)
AKR/J	MGP_AKRJ_G0015315	unclassified non-coding RNA gene	Chr19:3226649-3234416 (-)
BALB/cJ	MGP_BALBcJ_G0015315	unclassified non-coding RNA gene	Chr19:3129460-3137983 (-)
C3H/HeJ	MGP_C3HHeJ_G0015139	unclassified non-coding RNA gene	Chr19:3246638-3254448 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015769	unclassified non-coding RNA gene	Chr19:3372101-3379911 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013510	unclassified non-coding RNA gene	Chr19:3054636-3062789 (-)
CAST/EiJ	MGP_CASTEiJ_G0014690	unclassified non-coding RNA gene	Chr19:3269785-3277510 (-)
CBA/J	MGP_CBAJ_G0015118	unclassified non-coding RNA gene	Chr19:3541019-3550825 (-)
DBA/2J	MGP_DBA2J_G0015213	unclassified non-coding RNA gene	Chr19:3122567-3130306 (-)
FVB/NJ	MGP_FVBNJ_G0015220	unclassified non-coding RNA gene	Chr19:3135998-3143800 (-)
LP/J	MGP_LPJ_G0015293	unclassified non-coding RNA gene	Chr19:3283393-3291203 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015246	unclassified non-coding RNA gene	Chr19:3345749-3353559 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015808	unclassified non-coding RNA gene	Chr19:3254462-3262376 (-)
PWK/PhJ	MGP_PWKPhJ_G0014480	unclassified non-coding RNA gene	Chr19:3151728-3159683 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014267	unclassified non-coding RNA gene	Chr19:3213833-3221334 (-)
WSB/EiJ	MGP_WSBEiJ_G0014797	unclassified non-coding RNA gene	Chr19:3266197-3274870 (-)

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Gene Tree

Gm14963

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

45
Gene trapped

45
Find Mice (IMSR)

58 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

23
RefSeq

1

Ensembl

ENSMUSG00000085196 (Evidence)
NCBI Gene

105246847

Representative Sequences				Length	Strain/Species	Flank
	genomic	105246847	NCBI Gene Model \| MGI Sequence Detail	7785	C57BL/6J	± kb
	transcript	NR_168273	RefSeq \| MGI Sequence Detail	2532	ZRU/MplStud

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All nucleic 1

cDNA 1

Summaries

All 11

Phenotypes 4
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm14963:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157848	Chr19:6328225-6328250 (-)	-1,630 bp
Tssr157847	Chr19:6327754-6327796 (-)	-1,167 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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