Gm14870 Pseudogene Detail

Summary

• Symbol
  Gm14870
• Name
  predicted gene 14870

• Feature Type
  pseudogene
• IDs
  MGI:3705444
  NCBI Gene: 115489155
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:107937102-107937257 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.92 cM

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705444	pseudogene	ChrX:107937102-107937257 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014725	pseudogene	ChrX:105732560-105732715 (+)
A/J	MGP_AJ_G0014728	pseudogene	ChrX:105602464-105602619 (+)
AKR/J	MGP_AKRJ_G0014661	pseudogene	ChrX:108889227-108889382 (+)
BALB/cJ	MGP_BALBcJ_G0014680	pseudogene	ChrX:104284421-104284576 (+)
C3H/HeJ	MGP_C3HHeJ_G0014512	pseudogene	ChrX:106200227-106200382 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015165	pseudogene	ChrX:108783430-108783585 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012109	pseudogene	Chr7:11989321-11989472 (-)
CAST/EiJ	MGP_CASTEiJ_G0014131	pseudogene	ChrX:90239652-90239807 (+)
CBA/J	MGP_CBAJ_G0014504	pseudogene	ChrX:112208344-112208499 (+)
DBA/2J	MGP_DBA2J_G0014587	pseudogene	ChrX:104767142-104767281 (+)
FVB/NJ	MGP_FVBNJ_G0014566	pseudogene	ChrX:104148329-104148484 (+)
LP/J	MGP_LPJ_G0014681	pseudogene	ChrX:106749073-106749228 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014615	pseudogene	ChrX:117208513-117208668 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015134	pseudogene	ChrX:105292961-105293116 (+)
PWK/PhJ	MGP_PWKPhJ_G0011534	pseudogene	Chr3:16374877-16375032 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014212	pseudogene	ChrX:104039308-104039463 (+)

Homology

• Gene Tree
  Gm14870
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081748 (Evidence)
• NCBI Gene
  115489155

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081748	Ensembl Gene Model | MGI Sequence Detail	156	C57BL/6J
transcript	ENSMUST00000118414	Ensembl | MGI Sequence Detail	156	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm14870:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161841	ChrX:107936755-107936802 (+)	-323 bp