Gm15421 Pseudogene Detail

Summary

• Symbol
  Gm15421
• Name
  predicted gene 15421

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705475
  NCBI Gene: 100042049
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:22733219-22734028 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.07 cM

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705475	pseudogene	Chr5:22733219-22734242 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039716	pseudogene	Chr5:20091686-20093573 (-)
A/J	MGP_AJ_G0039716	pseudogene	Chr5:19464392-19465315 (-)
AKR/J	MGP_AKRJ_G0039640	pseudogene	Chr5:20211685-20212561 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039346	pseudogene	Chr5:20290204-20291040 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0036837	pseudogene	Chr15:1943898-1944288 (-)
CAST/EiJ	MGP_CASTEiJ_G0038423	pseudogene	Chr15:2205267-2205660 (-)
CBA/J	MGP_CBAJ_G0039317	pseudogene	Chr5:21817742-21818623 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039470	pseudogene	Chr5:19135412-19145860 (-)
LP/J	MGP_LPJ_G0039550	pseudogene	Chr5:20504784-20505701 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039472	pseudogene	Chr5:23055203-23056507 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038097	pseudogene	Chr15:2171306-2171699 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037848	pseudogene	Chr15:2152192-2152585 (-)
WSB/EiJ	MGP_WSBEiJ_G0038655	pseudogene	Chr15:2146988-2147381 (-)

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm15421
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084235 (Evidence), ENSMUSG00000121712 (Evidence)
• NCBI Gene
  100042049

Representative Sequences			Length	Strain/Species
genomic	100042049	NCBI Gene Model | MGI Sequence Detail	810	C57BL/6J
transcript	NR_004442	RefSeq | MGI Sequence Detail	810	Not Specified

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804

TSS for Gm15421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50252	Chr5:22733708-22733713 (-)	317 bp