Gm15484 Pseudogene Detail

Summary

• Symbol
  Gm15484
• Name
  predicted gene 15484

• Feature Type
  pseudogene
• IDs
  MGI:3705726
  NCBI Gene: 102639044
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:110265888-110266715 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.31 cM

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705726	pseudogene	Chr5:110265568-110266808 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012092	pseudogene	Chr3:34258087-34258911 (+)
AKR/J	MGP_AKRJ_G0012053	pseudogene	Chr3:34894294-34895118 (+)
BALB/cJ	MGP_BALBcJ_G0012068	pseudogene	Chr3:34008515-34009338 (+)
C3H/HeJ	MGP_C3HHeJ_G0011946	pseudogene	Chr3:34951280-34952210 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011919	pseudogene	Chr3:37565301-37566125 (+)
DBA/2J	MGP_DBA2J_G0011973	pseudogene	Chr3:33696013-33696837 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014013	pseudogene	Chr9:16191955-16192773 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013563	pseudogene	Chr5:111069314-111070055 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm15484
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15484
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000081865 (Evidence)
• NCBI Gene
  102639044

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081865	Ensembl Gene Model | MGI Sequence Detail	828	C57BL/6J
transcript	ENSMUST00000118871	Ensembl | MGI Sequence Detail	828	Not Applicable

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm15484:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52494	Chr5:110266811-110266813 (-)	-97 bp