Gm15012 Pseudogene Detail

Summary

• Symbol
  Gm15012
• Name
  predicted gene 15012

• Feature Type
  pseudogene
• IDs
  MGI:3705760
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:138695749-138695854 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 61.35 cM

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705760	pseudogene	ChrX:138695749-138695854 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014861	pseudogene	ChrX:137308322-137308427 (-)
A/J	MGP_AJ_G0014855	pseudogene	ChrX:136686429-136686534 (-)
AKR/J	MGP_AKRJ_G0014796	pseudogene	ChrX:141082861-141082966 (-)
BALB/cJ	MGP_BALBcJ_G0014810	pseudogene	ChrX:135035913-135036018 (-)
C3H/HeJ	MGP_C3HHeJ_G0014646	pseudogene	ChrX:137342730-137342835 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015298	pseudogene	ChrX:141345798-141345903 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012941	pseudogene	ChrX:128444450-128444555 (-)
CAST/EiJ	MGP_CASTEiJ_G0014260	pseudogene	ChrX:118142908-118143013 (-)
CBA/J	MGP_CBAJ_G0014635	pseudogene	ChrX:145676707-145676812 (-)
DBA/2J	MGP_DBA2J_G0014718	pseudogene	ChrX:135863275-135863380 (-)
FVB/NJ	MGP_FVBNJ_G0014701	pseudogene	ChrX:135096214-135096319 (-)
LP/J	MGP_LPJ_G0014817	pseudogene	ChrX:138280859-138280964 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014746	pseudogene	ChrX:153193566-153193671 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015279	pseudogene	ChrX:136619986-136620091 (-)
PWK/PhJ	MGP_PWKPhJ_G0014060	pseudogene	ChrX:115066784-115066889 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013850	pseudogene	ChrX:118677646-118677751 (-)
WSB/EiJ	MGP_WSBEiJ_G0014340	pseudogene	ChrX:134946631-134946736 (-)

Homology

• Gene Tree
  Gm15012
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081018 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081018	Ensembl Gene Model | MGI Sequence Detail	106	C57BL/6J
transcript	ENSMUST00000119176	Ensembl | MGI Sequence Detail	106	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15012:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164220	ChrX:138697119-138697148 (-)	-1,280 bp