Rhox11-ps2 Pseudogene Detail

Summary

• Symbol
  Rhox11-ps2
• Name
  reproductive homeobox 11, pseudogene 2
• Synonyms
  Gm14544

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705790
  NCBI Gene: 102637882
• Member of
  Rhox cluster
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:37029693-37034479 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 22.19 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705790	pseudogene	ChrX:37029473-37034541 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040678	pseudogene	ChrX:32871977-32876763 (-)
A/J	MGP_AJ_G0040677	pseudogene	ChrX:32943559-32948729 (-)
AKR/J	MGP_AKRJ_G0040600	pseudogene	ChrX:33672683-33677469 (-)
BALB/cJ	MGP_BALBcJ_G0040666	pseudogene	ChrX:32635297-32640083 (-)
C3H/HeJ	MGP_C3HHeJ_G0040303	pseudogene	ChrX:33210203-33214989 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041363	pseudogene	ChrX:33597559-33602345 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037497	pseudogene	ChrX:31317427-31322216 (-)
CAST/EiJ	MGP_CASTEiJ_G0039341	pseudogene	ChrX:21224548-21229348 (-)
CBA/J	MGP_CBAJ_G0040267	pseudogene	ChrX:34440845-34445631 (-)
DBA/2J	MGP_DBA2J_G0040483	pseudogene	ChrX:32774564-32779350 (-)
FVB/NJ	MGP_FVBNJ_G0040400	pseudogene	ChrX:32503258-32508044 (-)
LP/J	MGP_LPJ_G0040521	pseudogene	ChrX:33252299-33257083 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040405	pseudogene	ChrX:34797102-34801888 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041412	pseudogene	ChrX:32902594-32907380 (-)
PWK/PhJ	MGP_PWKPhJ_G0038996	pseudogene	ChrX:20819922-20824911 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038711	pseudogene	ChrX:21716533-21721254 (-)
WSB/EiJ	MGP_WSBEiJ_G0039591	pseudogene	ChrX:32596061-32600833 (-)

Homology

• Gene Tree
  Rhox11-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Rhox11-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081133 (Evidence)
• NCBI Gene
  102637882

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081133	Ensembl Gene Model | MGI Sequence Detail	4787	C57BL/6J
transcript	ENSMUST00000117962	Ensembl | MGI Sequence Detail	451	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:229199 Song HW, et al., shRNA off-target effects in vivo: impaired endogenous siRNA expression and spermatogenic defects. PLoS One. 2015;10(3):e0118549
• Latest
  J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118

TSS for Rhox11-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163176	ChrX:37034531-37034552 (-)	-63 bp