Gm10138 Gene Detail

Summary

• Symbol
  Gm10138
• Name
  predicted gene 10138

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3708522
  NCBI Gene: 108167733
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr1:151174226-151220982 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 64.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1460 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708522	lncRNA gene	Chr1:151173862-151224416 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002761	antisense lncRNA gene	Chr1:156061759-156067379 (-)
A/J	MGP_AJ_G0002737	antisense lncRNA gene	Chr1:149758824-149764424 (-)
AKR/J	MGP_AKRJ_G0002718	antisense lncRNA gene	Chr1:154370754-154376419 (-)
BALB/cJ	MGP_BALBcJ_G0002724	antisense lncRNA gene	Chr1:150320667-150326281 (-)
C3H/HeJ	MGP_C3HHeJ_G0002682	antisense lncRNA gene	Chr1:154512602-154518202 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002867	antisense lncRNA gene	Chr1:161462296-161467957 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002414	antisense lncRNA gene	Chr1:142104070-142109618 (-)
CAST/EiJ	MGP_CASTEiJ_G0002655	antisense lncRNA gene	Chr1:153941787-153947381 (-)
CBA/J	MGP_CBAJ_G0002678	antisense lncRNA gene	Chr1:167140660-167146255 (-)
DBA/2J	MGP_DBA2J_G0002684	antisense lncRNA gene	Chr1:148808926-148814516 (-)
FVB/NJ	MGP_FVBNJ_G0002704	antisense lncRNA gene	Chr1:147261671-147267261 (-)
LP/J	MGP_LPJ_G0002762	antisense lncRNA gene	Chr1:157115520-157121123 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002694	antisense lncRNA gene	Chr1:174855834-174861424 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002871	antisense lncRNA gene	Chr1:154139246-154144846 (-)
PWK/PhJ	MGP_PWKPhJ_G0002612	antisense lncRNA gene	Chr1:147767404-147773090 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002563	antisense lncRNA gene	Chr1:152976047-152983467 (-)
WSB/EiJ	MGP_WSBEiJ_G0002684	antisense lncRNA gene	Chr1:154240731-154246323 (-)

Homology

• Gene Tree
  Gm10138
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm10138
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000100954 (Evidence)
• NCBI Gene
  108167733

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100954	Ensembl Gene Model | MGI Sequence Detail	46757	C57BL/6J
transcript	ENSMUST00000186597	Ensembl | MGI Sequence Detail	2498	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10138:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14186	Chr1:151221055-151221074 (-)	-83 bp
Tssr14185	Chr1:151220975-151221029 (-)	-20 bp
Tssr14184	Chr1:151220959-151220973 (-)	16 bp
Tssr14183	Chr1:151220844-151220862 (-)	129 bp
Tssr14182	Chr1:151220813-151220840 (-)	155 bp
Tssr14181	Chr1:151220193-151220200 (-)	785 bp
Tssr14180	Chr1:151220127-151220137 (-)	850 bp
Tssr14179	Chr1:151220069-151220104 (-)	895 bp
Tssr14178	Chr1:151219803-151219820 (-)	1,170 bp