Gm9929 Gene Detail

Summary

• Symbol
  Gm9929
• Name
  predicted gene 9929

• Feature Type
  lncRNA gene
• IDs
  MGI:3708526
  NCBI Gene: 115487180
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:170695399-170698313 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 77.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708526	lncRNA gene	Chr1:170695399-170709916 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015124	unclassified non-coding RNA gene	Chr1:176614258-176627877 (+)
A/J	MGP_AJ_G0015098	unclassified non-coding RNA gene	Chr1:169418443-169431379 (+)
AKR/J	MGP_AKRJ_G0015061	unclassified non-coding RNA gene	Chr1:174485485-174501288 (+)
BALB/cJ	MGP_BALBcJ_G0015061	unclassified non-coding RNA gene	Chr1:169874791-169887958 (+)
C3H/HeJ	MGP_C3HHeJ_G0014884	unclassified non-coding RNA gene	Chr1:174741837-174754595 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015517	unclassified non-coding RNA gene	Chr1:182443130-182463566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013263	unclassified non-coding RNA gene	Chr1:161141340-161142942 (+)
CAST/EiJ	MGP_CASTEiJ_G0014438	unclassified non-coding RNA gene	Chr1:174377991-174390758 (+)
CBA/J	MGP_CBAJ_G0014863	unclassified non-coding RNA gene	Chr1:188945280-188960786 (+)
DBA/2J	MGP_DBA2J_G0014956	unclassified non-coding RNA gene	Chr1:168255832-168269456 (+)
FVB/NJ	MGP_FVBNJ_G0014967	unclassified non-coding RNA gene	Chr1:166626342-166639320 (+)
LP/J	MGP_LPJ_G0015038	unclassified non-coding RNA gene	Chr1:177734227-177747142 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014994	unclassified non-coding RNA gene	Chr1:196263041-196276688 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015556	unclassified non-coding RNA gene	Chr1:174388687-174401592 (+)
PWK/PhJ	MGP_PWKPhJ_G0014230	unclassified non-coding RNA gene	Chr1:167508705-167521845 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014018	unclassified non-coding RNA gene	Chr1:173137891-173150110 (+)
WSB/EiJ	MGP_WSBEiJ_G0014541	unclassified non-coding RNA gene	Chr1:174507344-174522304 (+)

Homology

• Gene Tree
  Gm9929
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  21
• Chemically induced (other)
  2
• Gene trapped
  19
• Genomic Mutations
  2 involving Gm9929
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000053925 (Evidence)
• NCBI Gene
  115487180

Representative Sequences			Length	Strain/Species
genomic	115487180	NCBI Gene Model | MGI Sequence Detail	2915	C57BL/6J
transcript	AK089343	GenBank | ENA | DDBJ | MGI Sequence Detail	2869	C57BL/6J
polypeptide	Q8C236	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm9929:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9934	Chr1:170696245-170696276 (+)	862 bp
Tssr9935	Chr1:170696277-170696289 (+)	884 bp