Gm9843 Pseudogene Detail

Summary

• Symbol
  Gm9843
• Name
  predicted gene 9843

• Feature Type
  pseudogene
• IDs
  MGI:3708621
  NCBI Gene: 100039316
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:76200139-76200540 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 43.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708621	pseudogene	Chr16:76200094-76200599 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0024740	protein coding gene	Chr19:3087170-3088736 (+)
A/J	MGP_AJ_G0024706	protein coding gene	Chr19:2914690-2916470 (+)
AKR/J	MGP_AKRJ_G0024679	protein coding gene	Chr19:3006011-3007515 (+)
BALB/cJ	MGP_BALBcJ_G0024706	protein coding gene	Chr19:2909934-2911502 (+)
C3H/HeJ	MGP_C3HHeJ_G0024474	protein coding gene	Chr19:3023736-3025304 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0022586	protein coding gene	Chr19:2844177-2845951 (+)
CAST/EiJ	MGP_CASTEiJ_G0023946	protein coding gene	Chr19:3031205-3032773 (+)
CBA/J	MGP_CBAJ_G0024446	protein coding gene	Chr19:3294649-3296425 (+)
DBA/2J	MGP_DBA2J_G0024573	protein coding gene	Chr19:2901813-2903584 (+)
FVB/NJ	MGP_FVBNJ_G0024539	protein coding gene	Chr19:2915397-2918559 (+)
LP/J	MGP_LPJ_G0024659	protein coding gene	Chr19:3065387-3066953 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022785	protein coding gene	Chr16:85397039-85397542 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023392	protein coding gene	Chr16:75638415-75638918 (-)
PWK/PhJ	MGP_PWKPhJ_G0023692	protein coding gene	Chr19:2934154-2935721 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023497	protein coding gene	Chr19:2994766-2996333 (+)
WSB/EiJ	MGP_WSBEiJ_G0024008	protein coding gene	Chr19:3042738-3044306 (+)

Homology

• Gene Tree
  Gm9843
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  3
• Genomic Mutations
  4 involving Gm9843
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000050299 (Evidence)
• NCBI Gene
  100039316

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050299	Ensembl Gene Model | MGI Sequence Detail	402	C57BL/6J
transcript	ENSMUST00000052867	Ensembl | MGI Sequence Detail	402	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 8
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:339533 Duchon A, et al., Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models. Hum Mol Genet. 2021 May 28;30(9):771-788

TSS for Gm9843:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141824	Chr16:76200561-76200605 (-)	-43 bp