Gm9899 Gene Detail

Summary

• Symbol
  Gm9899
• Name
  predicted gene 9899

• Feature Type
  lncRNA gene
• IDs
  MGI:3708711
  NCBI Gene: 100502829
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:30731331-30745963 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 16.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  314 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708711	lncRNA gene	Chr5:30731331-30745963 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015592	unclassified non-coding RNA gene	Chr5:28526123-28542021 (-)
A/J	MGP_AJ_G0015568	unclassified non-coding RNA gene	Chr5:27588358-27603794 (-)
AKR/J	MGP_AKRJ_G0015532	unclassified non-coding RNA gene	Chr5:28735585-28751843 (-)
BALB/cJ	MGP_BALBcJ_G0015530	unclassified non-coding RNA gene	Chr5:28116960-28131816 (-)
C3H/HeJ	MGP_C3HHeJ_G0015352	unclassified non-coding RNA gene	Chr5:28733282-28748642 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015984	unclassified non-coding RNA gene	Chr5:30266282-30282157 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013719	unclassified non-coding RNA gene	Chr5:25079483-25093952 (-)
CAST/EiJ	MGP_CASTEiJ_G0014908	unclassified non-coding RNA gene	Chr5:27829758-27846230 (-)
CBA/J	MGP_CBAJ_G0015333	unclassified non-coding RNA gene	Chr5:30861457-30879558 (-)
DBA/2J	MGP_DBA2J_G0015427	unclassified non-coding RNA gene	Chr5:27778282-27793016 (-)
FVB/NJ	MGP_FVBNJ_G0015434	unclassified non-coding RNA gene	Chr5:27188312-27202581 (-)
LP/J	MGP_LPJ_G0015508	unclassified non-coding RNA gene	Chr5:28978124-28992608 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015457	unclassified non-coding RNA gene	Chr5:31756664-31771093 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016026	unclassified non-coding RNA gene	Chr5:28239764-28254474 (-)
PWK/PhJ	MGP_PWKPhJ_G0014693	unclassified non-coding RNA gene	Chr5:26891313-26906098 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014481	unclassified non-coding RNA gene	Chr5:27587633-27601908 (-)
WSB/EiJ	MGP_WSBEiJ_G0015012	unclassified non-coding RNA gene	Chr5:28311953-28327401 (-)

Homology

• Gene Tree
  Gm9899
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Radiation induced
  3
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm9899
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000053214 (Evidence)
• NCBI Gene
  100502829

Representative Sequences			Length	Strain/Species
genomic	100502829	NCBI Gene Model | MGI Sequence Detail	14633	C57BL/6J
transcript	NR_040427	RefSeq | MGI Sequence Detail	4823	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 27

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm9899:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50497	Chr5:30746104-30746119 (-)	-149 bp
Tssr50496	Chr5:30746082-30746095 (-)	-126 bp
Tssr50495	Chr5:30745810-30745823 (-)	146 bp