Gm14541 Pseudogene Detail

Summary

• Symbol
  Gm14541
• Name
  predicted gene 14541

• Feature Type
  pseudogene
• IDs
  MGI:3709642
  NCBI Gene: 102636101
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:36102790-36102946 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 21.25 cM

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3709642	pseudogene	ChrX:36102644-36103004 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014363	pseudogene	ChrX:31767924-31768080 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0014299	pseudogene	ChrX:32554485-32554641 (-)
BALB/cJ	MGP_BALBcJ_G0014323	pseudogene	ChrX:31571143-31571299 (-)
C3H/HeJ	MGP_C3HHeJ_G0014158	pseudogene	ChrX:32086601-32086757 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014783	pseudogene	ChrX:32398343-32398499 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012568	pseudogene	ChrX:30057189-30057344 (-)
CAST/EiJ	MGP_CASTEiJ_G0013799	pseudogene	ChrX:20239487-20239643 (-)
CBA/J	MGP_CBAJ_G0014142	pseudogene	ChrX:33250303-33250459 (-)
DBA/2J	MGP_DBA2J_G0014220	pseudogene	ChrX:31658535-31658691 (-)
FVB/NJ	MGP_FVBNJ_G0014221	pseudogene	ChrX:31429696-31430660 (-)
LP/J	MGP_LPJ_G0014317	pseudogene	ChrX:32113556-32113712 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014256	pseudogene	ChrX:33712356-33712512 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014754	pseudogene	ChrX:31737967-31738123 (-)
PWK/PhJ	MGP_PWKPhJ_G0013615	pseudogene	ChrX:19704227-19704382 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013406	pseudogene	ChrX:20723779-20723935 (-)
WSB/EiJ	MGP_WSBEiJ_G0013864	pseudogene	ChrX:31533640-31533796 (-)

Homology

• Gene Tree
  Gm14541
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084265 (Evidence)
• NCBI Gene
  102636101

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084265	Ensembl Gene Model | MGI Sequence Detail	157	C57BL/6J
transcript	ENSMUST00000118985	Ensembl | MGI Sequence Detail	157	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm14541:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163133	ChrX:36102994-36103008 (-)	-55 bp