D630044L22Rik Gene Detail

Summary

• Symbol
  D630044L22Rik
• Name
  RIKEN cDNA gene D630044L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3709661
  NCBI Gene: 240054
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26170446-26182584 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3709661	lncRNA gene	Chr17:26170446-26182586 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023385	protein coding gene	Chr17:25067624-25081083 (+)
A/J	MGP_AJ_G0023344	protein coding gene	Chr17:24326451-24338821 (+)
AKR/J	MGP_AKRJ_G0023310	protein coding gene	Chr17:24439868-24452948 (+)
BALB/cJ	MGP_BALBcJ_G0023349	protein coding gene	Chr17:24557087-24569313 (+)
C3H/HeJ	MGP_C3HHeJ_G0023109	protein coding gene	Chr17:24821281-24833848 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023791	protein coding gene	Chr17:26121283-26133922 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021267	protein coding gene	Chr17:21788814-21800517 (+)
CAST/EiJ	MGP_CASTEiJ_G0022611	protein coding gene	Chr17:24714218-24728184 (+)
CBA/J	MGP_CBAJ_G0023084	protein coding gene	Chr17:27045505-27062741 (+)
DBA/2J	MGP_DBA2J_G0023214	protein coding gene	Chr17:23927664-23939555 (+)
FVB/NJ	MGP_FVBNJ_G0023184	protein coding gene	Chr17:23683276-23695332 (+)
LP/J	MGP_LPJ_G0023291	protein coding gene	Chr17:25355096-25366748 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023203	protein coding gene	Chr17:26632231-26646221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023831	protein coding gene	Chr17:24760140-24773341 (+)
PWK/PhJ	MGP_PWKPhJ_G0022360	protein coding gene	Chr17:22703105-22715682 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022178	protein coding gene	Chr17:22836814-22852114 (+)
WSB/EiJ	MGP_WSBEiJ_G0022674	protein coding gene	Chr17:24811506-24823257 (+)

Homology

• Gene Tree
  D630044L22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving D630044L22Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097405 (Evidence)
• NCBI Gene
  240054

Representative Sequences			Length	Strain/Species
genomic	240054	NCBI Gene Model | MGI Sequence Detail	12139	C57BL/6J
transcript	NR_152187	RefSeq | MGI Sequence Detail	2964	C57BL/6
polypeptide	Q8C701	UniProt | EBI | MGI Sequence Detail	164	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for D630044L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143198	Chr17:26180712-26180741 (+)	10,281 bp