Gm14523 Pseudogene Detail

Summary

• Symbol
  Gm14523
• Name
  predicted gene 14523

• Feature Type
  pseudogene
• IDs
  MGI:3710228
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:23230745-23231302 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 17.27 cM

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3710228	pseudogene	ChrX:23230745-23231302 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039765	pseudogene	ChrX:18249641-18250198 (-)
A/J	MGP_AJ_G0039764	pseudogene	ChrX:18353702-18354259 (-)
AKR/J	MGP_AKRJ_G0039689	pseudogene	ChrX:19006887-19007444 (-)
BALB/cJ	MGP_BALBcJ_G0039733	pseudogene	ChrX:18104791-18105348 (-)
C3H/HeJ	MGP_C3HHeJ_G0039392	pseudogene	ChrX:18522367-18522924 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040294	pseudogene	ChrX:18746870-18747427 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036921	pseudogene	ChrX:16541639-16542196 (-)
CAST/EiJ	MGP_CASTEiJ_G0038512	pseudogene	ChrX:17748041-17748598 (-)
CBA/J	MGP_CBAJ_G0039365	pseudogene	ChrX:19577675-19578232 (-)
DBA/2J	MGP_DBA2J_G0039561	pseudogene	ChrX:18176441-18176998 (-)
FVB/NJ	MGP_FVBNJ_G0039519	pseudogene	ChrX:18030139-18030696 (-)
LP/J	MGP_LPJ_G0039600	pseudogene	ChrX:18538862-18539419 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039519	pseudogene	ChrX:20077092-20077649 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040401	pseudogene	ChrX:18207774-18208331 (-)
PWK/PhJ	MGP_PWKPhJ_G0038189	pseudogene	ChrX:17245221-17245778 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037935	pseudogene	ChrX:18117538-18118095 (-)
WSB/EiJ	MGP_WSBEiJ_G0038747	pseudogene	ChrX:18049541-18050098 (-)

Homology

• Gene Tree
  Gm14523
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000080862 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080862	Ensembl Gene Model | MGI Sequence Detail	558	C57BL/6J
transcript	ENSMUST00000117260	Ensembl | MGI Sequence Detail	558	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm14523:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163125	ChrX:23231283-23231329 (-)	-4 bp
Tssr163124	ChrX:23231247-23231282 (-)	37 bp