Gm10080 Pseudogene Detail

Summary

• Symbol
  Gm10080
• Name
  predicted gene 10080

• Feature Type
  pseudogene
• IDs
  MGI:3710529
  NCBI Gene: 100043172
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:44286041-44286478 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 24.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3710529	pseudogene	Chr9:44285895-44286507 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036493	pseudogene	Chr9:42858467-42859252 (-)
A/J	MGP_AJ_G0036478	pseudogene	Chr9:41662417-41663020 (-)
AKR/J	MGP_AKRJ_G0036428	pseudogene	Chr9:42525085-42525699 (-)
BALB/cJ	MGP_BALBcJ_G0036468	pseudogene	Chr9:41409190-41410201 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0036979	pseudogene	Chr9:44127863-44133334 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0036133	pseudogene	Chr9:45728481-45729199 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0036357	pseudogene	Chr9:43155330-43155891 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0037095	pseudogene	Chr9:42422862-42425083 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0035461	pseudogene	Chr14:49673471-49675607 (-)

Homology

• Gene Tree
  Gm10080
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000060467 (Evidence)
• NCBI Gene
  100043172

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060467	Ensembl Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	ENSMUST00000075585	Ensembl | MGI Sequence Detail	438	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10080:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89148	Chr9:44286511-44286535 (-)	-45 bp