Gm9800 Pseudogene Detail

Summary

• Symbol
  Gm9800
• Name
  predicted gene 9800

• Feature Type
  pseudogene
• IDs
  MGI:3710580
  NCBI Gene: 100041948
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:13669438-13669773 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 4.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3710580	pseudogene	Chr14:13669438-13669773 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036478	pseudogene	Chr8:90264913-90265825 (-)
A/J	MGP_AJ_G0036464	pseudogene	Chr8:86724870-86725766 (-)
AKR/J	MGP_AKRJ_G0036414	pseudogene	Chr8:89248278-89249177 (-)
BALB/cJ	MGP_BALBcJ_G0036454	pseudogene	Chr8:86881761-86882662 (-)
C3H/HeJ	MGP_C3HHeJ_G0036147	pseudogene	Chr8:89868268-89869195 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0036967	pseudogene	Chr8:93670124-93670966 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035267	pseudogene	Chr13:61973394-61974286 (+)
CBA/J	MGP_CBAJ_G0036119	pseudogene	Chr8:96826243-96829118 (-)
DBA/2J	MGP_DBA2J_G0036295	pseudogene	Chr8:86297691-86298592 (-)
FVB/NJ	MGP_FVBNJ_G0036249	pseudogene	Chr8:85263433-85264334 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0036250	pseudogene	Chr8:99258715-99259616 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037081	pseudogene	Chr8:89283049-89283950 (-)
PWK/PhJ	MGP_PWKPhJ_G0035036	pseudogene	Chr8:85587602-85588495 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0034852	pseudogene	Chr8:88092199-88094088 (-)
WSB/EiJ	MGP_WSBEiJ_G0035536	pseudogene	Chr8:89742721-89743622 (-)

Homology

• Gene Tree
  Gm9800
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000045799 (Evidence)
• NCBI Gene
  100041948

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045799	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000052615	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm9800:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127439	Chr14:13669254-13669256 (+)	-183 bp