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Ly6c2 Gene Detail
Summary
  • Symbol
    Ly6c2
  • Name
    lymphocyte antigen 6 family memberC2
  • Feature Type
    protein coding gene
  • IDs
    MGI:3712069
    NCBI Gene: 100041546
  • Member of
    Ly6 cluster
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:74980010-74983820 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 34.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    234 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3712069
 protein coding gene Chr15:74980007-74983820 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021950
 protein coding gene Chr15:75047584-75049973 (+)
A/J MGP_AJ_G0021908
 protein coding gene Chr15:72512696-72516553 (+)
AKR/J MGP_AKRJ_G0021892
 protein coding gene Chr15:74413535-74417273 (+)
BALB/cJ MGP_BALBcJ_G0021917
 protein coding gene Chr15:72472424-72476168 (+)
C3H/HeJ MGP_C3HHeJ_G0021688
 protein coding gene Chr15:74508684-74512690 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022355
 protein coding gene Chr15:77714926-77881428 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019889
 protein coding gene Chr15:69107070-69109432 (+)
CAST/EiJ MGP_CASTEiJ_G0021206
 protein coding gene Chr15:75130140-75132523 (+)
CBA/J MGP_CBAJ_G0021656
 protein coding gene Chr15:80543296-80547043 (+)
DBA/2J MGP_DBA2J_G0021781
 protein coding gene Chr15:72069009-72072807 (+)
FVB/NJ MGP_FVBNJ_G0021762
 protein coding gene Chr15:71081400-71085159 (+)
LP/J MGP_LPJ_G0021851
 protein coding gene Chr15:75150795-75153184 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021786
 protein coding gene Chr15:85839023-85842958 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022375
 protein coding gene Chr15:74371161-74374003 (-)
PWK/PhJ MGP_PWKPhJ_G0020947
 protein coding gene Chr15:71957710-71960100 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020786
 protein coding gene Chr15:74324385-74326784 (+)
WSB/EiJ MGP_WSBEiJ_G0021259
 protein coding gene Chr15:74634567-74636950 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    20
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100041546 NCBI Gene Model | MGI Sequence Detail 3811 C57BL/6J ±  kb
transcript NM_001415998 RefSeq | MGI Sequence Detail 889 C57BL/6  
polypeptide P0CW03 UniProt | EBI | MGI Sequence Detail 131 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 20
    Primer pair 1
References
more
  • Summaries
    All 42
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 4
    Phenotypes 24
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:329327 Swierczek-Lasek B, et al., Comparison of Muscle Regeneration after BMSC-Conditioned Medium, Syngeneic, or Allogeneic BMSC Injection. Cells. 2022 Sep 12;11(18)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory